Array 1 3091-2527 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDQ01000280.1 Paenibacillus sp. OT2-17 NODE_280_length_4765_cov_2.103277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3090 32 100.0 36 ................................ CCATTCTAATGATCATGTGTTATCTCTCCTTCTCAC 3022 32 100.0 33 ................................ ACAACTACATAATAATTTTAACTATGCATCGTA 2957 32 100.0 35 ................................ AGCTCGGTCGAAAACATTGCCTACGAAGGTAGAAC 2890 32 100.0 37 ................................ TCATCAATTAAACTATCTATTGTCCGATCCCTCTCTG 2821 32 100.0 34 ................................ CATAAATGCATCCGCTCGAAGTCTTCCGCTTCGG 2755 32 100.0 35 ................................ GGCTTCTGGGCCTTTTAATCCTACGACCGTTGTGA 2688 32 100.0 33 ................................ GCATTACCCTCCCAGTAATCCATCGTAAACACA 2623 32 100.0 33 ................................ TCTGACAAATGTTAATTAAGCAATGCCTCACAT 2558 32 84.4 0 ....T........C....AT..........G. | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 98.3 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AGTTCCGTATTCGTGTGAATGTCATCTATCCGGGTGCCATTTCGACCAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAACAAATTACCATCCCCGTCAAGTTTCCTGAAGGAGGACAACCGTTGGCTGATGGACCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCTTCTGATCATTCGCGTCACATTACTGGCGCACAAATTGTAATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATAGAGCATTCTCTGGGACAGAGAAATGTTTTGTGGTATCCTGAGTGTATTGTCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAATGGATTCGAATTAGCTTTCTTCGTTAGAAGTCAATAGTGGATTCAAGCTTTTTTGGCATCGTTTTTTTCGAAAATGCATGGAATTGATATCATTAGGGTATGAATTCCTTCATTTTCGCT # Right flank : ATCTATAGTGTTCGTAACCTTGCATAACAACTCTCAGCAGACTTTACATGATTGGAGCCAATATAATTTGTGTTATGAACTTTAAGATTATTAGTTTAGTTCTCTCTAAAAATACTATTTCCACATGACTTAAAATAATATTTGTTTACATAACGAGAATAGATCTAATATGATTAGTAAGTAGAAGAGAATCTAGTATTTTAAGCGGAATACAAGTCTCTTACAATAACCACCTAAAAGTCATAAAATGAATATAGAGCTATGGAGTGAAACCGTAATCCTTGAATTAAGTAGATAAAAGAGGAGAGGAAGGAGAATTACTACAACGCTAGGAAATTATATTAGTATTATTTATAAATTCACTTAACAACGGTAAATGTCCAAGTGGGGATTCTAGATGCTGTCGCTATTGTATCTTATGACACGATTACACATTTTAAGTATTTGCTCAAAGGGGGAAAATAGATGAATTTATTATCTATTCCTGGTTTATATTTTTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 922-1290 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDQ01000229.1 Paenibacillus sp. OT2-17 NODE_229_length_5493_cov_2.454156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 922 32 100.0 36 ................................ TAGTTACAGTAGCCATGGACACTCCAGCAGTGATTC 990 32 100.0 35 ................................ CCTATCCAAATGAGTATTAAGGTAGACGTGCTCGA 1057 32 96.9 36 ...................T............ TAATTCGTGGATTTACAGGTATCCCAAATCTATTAG 1125 32 100.0 35 ................................ TTACGAATGCATATTAAAAGATAGAGGACGTAAGA 1192 32 100.0 35 ................................ TGGTAGCTCTACACGCTCGGGGCCAGTATCGCAAA 1259 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATGCAGCCGGTATGATGAACAGGATTAATAACTCAACTTTTGCCGAACGTTTTCATAAAATATTTTACAAATACCTTTATGATTTTCGAAAACATAAAGGTATTTTTCTGATCAATGTAGTGGATATTTCCGGATGTATTTACCCAAAGCCAGAACGTTCAGCTTTGGTGTTAACTGGTGGGACCCTGCTTTTAAAAGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTTACTCCTTCACAGGTGGCAGAACTGGCAGAGGTGAAATAAGTCCAGGCAGGTATTTGTTGCTAAGCCAAAAAGCGAGTCTGTCCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGATTCGCACCTCAGATTTTGTCGAATTATATCGAATATGAACAAATTTTAAACGATCGCAAGAGGATGAGGTAATATTAGATGCGTTTTTGCCAAAATAACGCTAGAATGGTACTTAAATAGGGGGCATTTGACCCATTTTCGCT # Right flank : ATAGGAAAGTCGTTTCATTTCATTATTCCAGGTGGTATTTTCGTGATGGATATGCGAATTTGTTCGCTGCTAAAAGGTTTGGTTTAGAACAAGTCGTGGTTCAGTACAGTCAGCATTTTCATTTTACAAACGAAGATTTGCACGAGGAGGATTATATGAATAAAAATGATGATCGTCATGATATCACCCCAGAATAAAGAAGGCAGTCGAAAATATAGACGTACTCTTGATAAACTTTCTAATACATAAATAATCAGTCAAGTAAAAACACCGTTGGGAACGGAGAAAGCAATCACTATTTATCAAGTTTGTCCCTAATTGACAATGGAGTAGGTTGGGTTATTTTTATGAACGTAAGGAATTTGAAATTCACAAATCTAATATTTAATAGTAAAGCTGATCCTTTCTAGAATCAGCTTTACTGTTTACCCATTCCACTCTACAAGTAAAAGTACTTTTTTACTTGTGAGTCTTTAGCGTTCTGCCCTTAAAGAGAATAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1501-2424 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDQ01000443.1 Paenibacillus sp. OT2-17 NODE_443_length_3111_cov_1.721850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1501 33 54.5 37 TGTCGCACTCTATAT.................. AATTTTCTTGTACAGCAGCAGCGCCGGAAAGATCGTA 1571 32 93.9 34 ..........A....-................. ATAATAACGACACGTCGGGGTACGGGGATATATC 1637 33 100.0 38 ................................. TTTTGGTGTTATAGGCGTTGTACCGCCATCAGAACCAC 1708 33 100.0 34 ................................. CTTACATATTACTGGCTGTGGTGTGGCTGCTGTT 1775 33 100.0 34 ................................. CTCCTGCGTTACTTCCACTTTCTTGGCGAGTATC 1842 33 100.0 37 ................................. CATAAACGGAAATAGACCGCCCTGGACAAGGTAAACG 1912 33 100.0 37 ................................. ATTGCACTTGTTGCTGCATATTGACCACCATACAATC 1982 33 100.0 34 ................................. TAACCAGCACACTGGAAGGACGGTCTTTCCTGGA 2049 33 100.0 36 ................................. ATGCGTGTGGTTTTTGACATTCCGAAATGGGATCTG 2118 33 100.0 36 ................................. CGTAAAGAGTTAGAAAATCATGTAAAAGAGCAATTG 2187 33 100.0 37 ................................. TCATTTCGGCAGCGTGAGCAGGATTGGACCTAAGATA 2257 33 100.0 35 ................................. CCTTGACGCGAGTTTGCATATGCATCGTCTATCAC 2325 33 100.0 35 ................................. TCTTGATCTGGTTCGGGGTAGCTTGGGGAGTCATT 2393 32 93.9 0 ..........A....-................. | ========== ====== ====== ====== ================================= ====================================== ================== 14 33 95.9 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATCACGTATGATGTAAGCACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGGACTCGACCCAGTTCCGCAGCTTAAAGTATGAACTCGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAGAAGAAAGTAGAGCATATAGGGGCAAAGGAAGCTTACGATATGGAAAGCCCACTAATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCAATTAAATCAGTTACCTTCAGTAAAAGTCAATGGTTGACTCAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGGAATTGATATCATTAGGATATTAATTACTGCATTTTCGC # Right flank : TTTCACAAGTACCGCTCCCATCGAAATGAATAGAAGACACGTTGCGGAATTGAATCGCACAAGGGTTCTGACCAGGCTGTTATTGTTTCCGTTGATTGACTGGTTCCTTGCCGTCTGCACGTGCCATAAAGCCCCGGAATAACTCGGGAAGTGCCTCTGGATATTGCTGAATTACAGGAGCTCTGCTGCGATCTGTTTGAGCACTGGCGGTGTTGGGATGAGTTGGCCGTCACCTTTGTTGCCCTTGATGTAGGCTTTATCCTCGTAGGCATAATATACATCGCCTTGGCCCTCAACGACCGGGTAGCCGCTCTCATCATCAGTTAAAGATGTTAGCACGTGATTGCCATGTTGTGCGGCGTGCTCCTCATCATGCAAGCGCAGGATGCCGTCCTTACTTAAAAATGCGAAACGTGGTTGTGTAGTAGACACAATCATGTCCTCCTGAAATGATTTTTTTGAGAAATCAAAAAGGCCGACACATTGGCCGACCTGATTCA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA //