Array 1 36334-36841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVUW01000105.1 Pseudomonas aeruginosa strain 130_PAER 1042_36925_645915_828_,666+,734+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36334 28 96.4 32 .G.......................... AGGATGTCGCAGTCCATCAGCCGCTTGATCCC 36394 28 100.0 32 ............................ GCCATAAAGGATTAGGTAGCGCCCGACATGCC 36454 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 36514 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 36574 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 36634 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 36694 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 36754 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 36814 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TCGGACTCAGGCGGACTTGCGCCAGGCTGACCTGCCCCCCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCGAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 339-913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVUW01000134.1 Pseudomonas aeruginosa strain 130_PAER 1072_11766_274569_931+,...,347+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 339 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 399 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 459 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 519 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 579 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 640 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 700 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 760 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 820 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [832] 886 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCTATCAGCGCGACATCAAGCTGAAGCTGATTCAGCCTGGTAAGCCCACGCAGAATGCCTTCATCGAGTCGTTCAACGGTAAGTTCCGGGACGAATGCCTCAATGAGCACTGGTTCTGTTCGCTGGCCGAAGCGAGAATCCGCATCGCGGCCTGGCGGCGGGATTACAACGAACACCGACCGCACAGCGCGATTGGCAATCTCACCCCGGCAGAATTTGCTGCAAGTTGGCGAACTCGCCAGCAGCAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAGCTGGGGGCAGGTCACAGGTCAAGGCCATGCG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10668-9437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVUW01000134.1 Pseudomonas aeruginosa strain 130_PAER 1072_11766_274569_931+,...,347+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10667 28 100.0 32 ............................ ATATCGTTACCACCTTGCCGAGGATCGAGAGC 10607 28 100.0 33 ............................ TGCACCAGACCGCCACCAAGCTGCACGCTGCGT 10546 28 100.0 32 ............................ AGCAGGCGCCATGCGCGGGTCCGGCGGTGGCC 10486 28 100.0 32 ............................ TGTACAAAGGCGTTTACCGCAGAGTTGATTCC 10426 28 100.0 32 ............................ AGTTGCTGCTCGAACAGTGTGAGCCAGACGTG 10366 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 10306 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 10246 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 10186 28 100.0 32 ............................ TAGCCAGATTGCTGTGCGGCGACGGTTCATTC 10126 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 10066 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 10005 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 9945 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 9885 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 9825 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 9765 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 9705 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 9645 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 9585 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 9524 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 9464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //