Array 1 220690-222111 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAWJ01000002.1 Streptococcus agalactiae strain BSE002 out_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 220690 36 100.0 30 .................................... TCGTAAAATGATAAGTAATACAATAACACT 220756 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 220822 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 220888 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 220954 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 221020 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 221086 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 221152 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 221218 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 221284 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 221350 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 221416 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 221482 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 221548 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 221614 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 221680 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 221746 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 221812 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 221878 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 221944 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 222010 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 222076 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //