Array 1 577-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LHKD01000074.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N48680 N48680_contig_74, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
       576	    28	  96.6	    32	-............................	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 	
       516	    29	 100.0	    33	.............................	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC	
       454	    29	  96.6	    32	.........................G...	CGTCACTTTCTGACATTTTATTCAGTTCGTTA 	
       393	    29	  96.6	    32	..........T..................	TCATTTCTGGACGGGGCTGTGTGACGAATACG 	
       332	    29	 100.0	    32	.............................	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 	
       271	    29	  93.1	    32	A............T...............	GGATATGTGAAGTTCAGGTAGCCCATTACGCA 	
       210	    29	 100.0	    32	.............................	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 	
       149	    29	 100.0	    32	.............................	CAGGTTATGCGCAAAAATTAATTCATATTATA 	
        88	    29	  96.6	    32	.................A...........	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 	
        27	    27	  93.1	     0	...........................--	|                                	
==========	======	======	======	=============================	=================================	==================
        10	    29	  97.3	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   |
# Right flank :  C

# Questionable array : NO	 Score: 5.81
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-8.90,-10.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//