Array 1 124575-123326 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUUJ010000001.1 Escherichia coli strain 12-1308-4P contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124574 29 100.0 32 ............................. GCTAAATGCAATAGGTATTGAGTGGGAAATTA 124513 29 100.0 32 ............................. AATTTGTTTTGGCTAATGTGCCCGGCCTTGAT 124452 29 100.0 32 ............................. TCGGGGCCGTACCTACAGCGCGGAAGGTGAAC 124391 29 100.0 32 ............................. CTTGCTGCGACTGCCTGGTACAGCATCTATGA 124330 29 100.0 32 ............................. CAGTTACGGGATGCCTGGCGTTATTCGCCCGG 124269 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 124208 29 96.6 32 ............................T ATTATGGTTGATCTGTCTGTACAGAATGAGGC 124147 29 100.0 32 ............................. CTGGAGCTGGAAAAACCGGAGGTGTTAGATCC 124086 29 100.0 32 ............................. CAATGTTTTATTTTCGAATAGCACTTTTTGCA 124025 29 100.0 32 ............................. TATCCAAATGATAAATAGTGACTCATAAAAAC 123964 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 123903 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 123842 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 123781 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 123720 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 123659 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 123598 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 123537 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 123476 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 123415 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 123354 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 150976-150276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUUJ010000001.1 Escherichia coli strain 12-1308-4P contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 150975 29 100.0 32 ............................. AGTGTTGCGGAGGTTGAGTTGAGCACCTATCC 150914 29 100.0 32 ............................. GTGATGCCGAACACGCCAAATATCTCGCAAGC 150853 29 100.0 32 ............................. CGAAAAAAGGCGCGCTCAAAAACGGTGCGATC 150792 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 150731 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 150670 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 150609 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATGAGGATAT 150548 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 150487 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 150426 29 96.6 32 .....T....................... GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 150365 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 150304 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATACCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //