Array 1 62989-63629 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000001.1 Nocardiopsis sp. MG754419 scaffold_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 62989 30 100.0 31 .............................. GGTCCAGGTCCTGTGGGGACAGGTGCCAGGT 63050 30 100.0 31 .............................. CCACCAGCTACGACGAGGCGGCGGCGCTGAT 63111 30 96.7 31 .............................T CGCGGAGCGCAGGAATGCGGTTGAGCGATTC 63172 30 96.7 31 .............................G AAGAACGCCCCCGGACGGTGTTGCACCACCG 63233 30 100.0 31 .............................. GCACCGCCCGCACGTTCGCCGGGTACTACCG 63294 30 100.0 31 .............................. CCGACGACGCCCCCGACCTGGACGGCGTCAT 63355 30 96.7 31 .............................G CCGCCAAGGTCGCCATCACCAGACGGCCACC 63416 30 96.7 31 .............................G AAGCCACCGAAGGGCCGCTGCACATCGAGGT 63477 30 96.7 31 .............................C GGGACTTGATCAGGTTCCAGAGCGTCTGCCC 63538 30 96.7 31 .............................T CCTCGGTGTCTTCGGCGTTCGCGATCTCGTT 63599 30 86.7 0 .....................T...G..AC | A [63623] ========== ====== ====== ====== ============================== =============================== ================== 11 30 97.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : CGTGTCGGTCTTCAGACCGACCGCGGGCCGGACATCGAGTCCGGCCGGAACCTCGGGGTGATCTGGTGACCGTCATCATCCTCACGAACTGCCCCTCGGGCTTGCGCGGTCTGCTCACGAGGTGGTTGTTGCAGATCGCGCCGACGGTGTTCATCGGCAAGCCCTCCGCTCGGGTGCGCCAGGTTCTGTGGGACGAGGTGCACGAGTACGCGGGCAATGGCAGGGCGCTTCTCGTGTACACGACCAATAGTGAACAGGGGTTCGCCTTCGAGACGTTTGAGCACACGTGGAGACCGGTGGACCACGAGGGGATGACGCTCATCGAGCGCCCCAAGAATCAGGAGAAGGCGATCGCCACCCCCAAGAAGGGGTGGAGCAAGGCCTCGAAACGCCGCCGTTTCGCCAAGTAGGAAGCTCTGGGAAGTTTGTAACTTATGTCCAATTCGCAACAATGTGCAGATTCGGCCCTGTTCCGCGGATAACGTCGCAGGTCAGCGAGA # Right flank : CAATCGTCACCGCCCAGAGGGTCAGAGTTGGGCGCGGACGCCGGTCTCGCGGGCCAGGCCGGTGATCTGGTCGCCGATGTCGTGGCGGGTGGCCAGGCGCCCGTCACCGCGACGCAGCAGCGGCAGCACCGAGTGCCCTCGGGCGTCCTCCAACTCCAGCGCCAGGGCGGTGTACAGCGCCAGCAGTGCCAGCACCAGCCCGGCCACCCCGGAGACCGTCTCCATCATGCTCGAACCGGTCAGTTCCGCCATCCCGGTGAGGGAGAACCGCAGGCCGCTCCCGACCATCACGAACGCCACGACGAGCTTCTGTGTAGCCCCGGCGATCGGCACCAGCACCGCGATGCCCGCGACGATGAGCAGCACCCCGAGGGCGGCGCTCTGGGTCTGTGGATCGACGGTCAGCTTGACCGTGCCGAACAGGGCCCAGGTGCACCCGAGCACCCCCATGCTGGTGCTGGCGACCGGATCCCTCGCCAGGATCCCGAAGATGGAGGCGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5213-4267 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000219.1 Nocardiopsis sp. MG754419 scaffold_218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 5212 30 96.7 31 .............................C AGTCCCGGTCGGTGAGGGCCCGGTCGCGCTC 5151 30 100.0 31 .............................. ACACCGCCAAGGCGGCGGACACCCGCAACTC 5090 30 100.0 31 .............................. CGGTCATCCACCGGTCGGCTTCGTTGGCCGA 5029 30 100.0 31 .............................. ACTTCGGGCAGCTACTACAGCGATTCGCGCA 4968 30 96.7 31 .............................C TGTTCACGAGGCAGATGACCGCGATCGACCC 4907 30 96.7 31 .............................A CCGAACAATGCTCCAGCTGCGGAGCGATCCG 4846 30 96.7 31 .............................T CCGCGGGGGTCGACGTGTAGACCGTGTACCG 4785 30 96.7 31 .............................A TCACCCCCGCGATGATTGAGGAGATCGCCCG 4724 30 96.7 31 .............................A CCATGATCGGCCCCCGCATCGGGCTCCCCGA 4663 30 96.7 31 .............................C TGGATGCGCAGGTCCGGCCGCTGGATGTCGA 4602 30 96.7 31 .............................C AGGAACTGCGGTGGGAGCTGGAGGTCGCACG 4541 30 96.7 31 .............................A GGGTGTCGGTGCTGTAGCGGGGCCGGTAGAT 4480 30 96.7 32 .............................T GATCAAAGCCTTCGCGGGATGCGACATCGTCC 4418 30 100.0 31 .............................. CACAGCATCCAGTCGACCCGGATGCGCCCAG 4357 30 100.0 31 .............................. ACCTGAAAGCGCCGCCGGAGTGGCCGGGCGC 4296 30 93.3 0 ..........................G..T | ========== ====== ====== ====== ============================== ================================ ================== 16 30 97.5 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : ATGACCTATTCATTACGAGGCCTTTCGGGCCCCATGCAACCAGGTCCTATCACCTAGCTGAGCTGGCCTTATGGGCCTACTAGGTTCTTGACGATCCAGCAGAGTGCGCAACGGGCGGTCACCCTTTTGGTCACCCCCATGGCTAGCCAGTGGGGGGCTCCCCCATGCCTCTTCACCCTTTTAGAGAGTAAGAGAACACAGCCTCCGCAGCCTCCGCCAACCGCCGAACACATGCACTGAACTGGGGAAACACTGCGGAGGCTAAGGCAGATTCTCAGCCTCCGCCTAGCCTCCGCAGCCTCCGCAGCCTCCGCACGACAGAACCCGCAACGGCCCTCAGCGACTGCATGTCCAGCCTGCCCACGGAACCCGTAGCCGCGGCCGAGGATGTGCGGTAAGAAGTACCGAGGCCACCAGAACCACACAGGGGTGAAATGTCCGTTTCTCAACAACTTGCAGAAACGACCCCTCACCGCCGACAGAACACCAGGTCAGCAAGA # Right flank : AGGACGCTCCCGGGCCTGGCCAAGCATGGCCACTGTTACCTGCGCGTGCGGTAACCCCCACCTCAGATGGGATTCATCGAGTCTGGCTCTGTAGGTGAGGTTGTGCCGACGGGAGCTTCTACCTTTTTAGAGAGCAAGAAGAGCTAGCCTCCGCAGCCTCCACCACGCTGACATGATCACCCCCACTGGCTAGCTCGCAGGGATGCAGAACGCCCGTGGATTCTCCTCTGAGAAACCACGGGCGTTAAGCGAGTCCAGTGACGCATCGAGGGATTGCTGTTCGTCAGCTTGGGGAGACGTAGGCGAAGGCAGGAACTCGCCGGTCTGCGATGACGTGCGAGATCTCCCCAAGTCGCTCCCACCCGAGCTTCTCGTAGAGCCGGATTGCGGCCCGGTCCTTCTCCATCACGTCCAGAACCAGTCTGGTTCCTCGCTCCCGAGCGTCCTTCATAGCAGCCACGGTCAGCCTTTCGCCCAGGCTGCGCCCCCTCGCATCAGGG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51713-52312 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000015.1 Nocardiopsis sp. MG754419 scaffold_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 51713 30 96.7 31 .............................G ACACCATCCGCATCACTGTCATCTGACACCC 51774 30 96.7 31 .............................G GTGGCAAGGCGTTCCTGCCGTTCCTGCGGCC 51835 30 100.0 31 .............................. AGCGCGGCGAAGGCCACCCACATCCACGACT 51896 30 100.0 42 .............................. CCTCGAACACCACGAAAAGCAACCAGTTCGCGGGAACCGGGA 51968 30 96.7 40 .............................A ACAACGCCGACGTCGTCCCGGTGGCCCAGCCTCCCGAAGA 52038 30 100.0 31 .............................. ACGGTCCGGCCGGGTCCGCGGTCGAGGTCTC 52099 30 96.7 31 .............................T GCTCCTTGATCTGCTGGAGCGCGGAGTACGG 52160 30 96.7 31 .............................A TCTAGGCGAAAATGTCGTCAAAGGGGTCAAC 52221 30 96.7 32 .............................G GCTACCGGCTGACGGTGGTGGCCACCGAGTCC 52283 30 93.3 0 ............G................A | ========== ====== ====== ====== ============================== ========================================== ================== 10 30 97.3 33 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : GCCCAGGTAGGCGTCGACGGCGGTCATCACCCGGGCCTCCAGGGAGCCCGCCGGGGCGCTCATCGCTCGGGAGATCCGGTCCATCGCGTCGTCGACCAACATGTCGTAGACCGCGCGCAGAGCCGCTTCCCGGTCGGCGAAGTGTTCGTAGAAGTACCGGTTGGTGAGTTCGGCCTCCCGGCAGATCCGACCGACCGTCGCGGCGCGAAAGCCCGCGGTGCCGAACACCTCCAGCCCTGCCTCCAGGAGGCGCTGCCGCCGGGCCTCCTGCCGTTCGCGCGGGGGCATTCCCCGCCAGGAGCGCACGAGTTCGACGCGTGGTTCACTCATGCCCCCACGCTAGACGGGTCGGATGGTGGGACCCACGACCTTGATCAAGTGGCGCGGTCGTGCGAATCTTCCTGTGAGCTTCCGGCAATAAGAAGGTGTCCGTTTTGTCCGACTCTCGACAACATGCGAATTCGGCCCCTGCCGCCGGATAGAACCGCAGGTCAACGAGA # Right flank : ACATCCCACCCTCACCGAGCCTCACTGGAGGCTCTTCGCCGCCCCTTACGGGAAGACACGGTCCATCCCCTGCCGGGGTGTGTTCAGTTCAGCAGGCGATCCCTGACCGTGGCGAAGTCCTCCTCGGTCACTCCCGCTTTCAGGAGTAGGGCCCGCGCGTCCAGGTCATCGAGTACGTCGAGGAGGGCGCCGCGCAGCGTCAGGCCTCGGTCGGCCAGCAGAGACTCGATGGCCGGCCCCTGGTCGGTCTGCCCCATCAGGGCGAAGAGCGGCACGAGGGCGGCGGTGGAGAGTTCGTAGTCGTCGGCTATCGCCTCGGCCTCCACCTCGGCCGAGGCGAACAACAGCAGGGTGATCAGACCGGTTCGATCGCGTCCCGCCCCACAGTGGAAGAGCACACCGCCGGGCTCCGACCGTGCCAGGGCGGTGATCACGGTGGCGCACCGCTCGGCCTTGCGCTCAAGAAAGGGCCGAAAGTACAGCGGGCTGCCGTTCAGCCG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3536-4677 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000051.1 Nocardiopsis sp. MG754419 scaffold_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3536 30 100.0 35 .............................. CTGGTGAGCACCACGGCCGCCCACGGGCCGGTGTG 3601 30 100.0 34 .............................. TAGGGGACATGCCGGATGTCCCCTGACTGTCACC 3665 30 100.0 36 .............................. GTCGAGTTCGCCAACGACCGGGGCGGCGACCAGTGC 3731 30 100.0 35 .............................. AACTCCGCCATGCTCGGGTACGTCACCACATGCTG 3796 30 100.0 36 .............................. CGTACCGGCCGATCGGCTGGTCCGGCCCCGACCCCT 3862 30 100.0 35 .............................. AAAAAGGCCACAAGGTCGCCACCCCGCCTTCATCA 3927 30 96.7 36 .............................T CGGCGAGGTCGACACGGACGCCCATCCCGGACCTGC 3993 30 100.0 35 .............................. CCGTCCTCTACCAGGGCCACCCCGCCCTGACCATG 4058 30 100.0 37 .............................. AGCTCAGCGACGGCCCTGTGCCCGGCTGAGACGAGCC 4125 30 100.0 35 .............................. ACGATGACCGTGGTGGTGTCCTCGGGCTGGTGGAC 4190 30 100.0 35 .............................. ATGGGCATGGTGGCGTAGCGCTCCCAGCCTCCGGC 4255 30 100.0 35 .............................. ATCAGGGCCAGGTCCACGCGCCGCCCTCCGCCGAG 4320 30 100.0 35 .............................. ATCATGATGTTGCGCATCAGGGATCCTTGCTCGAT 4385 30 100.0 35 .............................. AGAGCGCACTGGACGCCGAGGCCCGCGACGACATC 4450 30 100.0 35 .............................. AAGAGGTGGGGAAGAGGACGCCTGGAAAGGCGAAC 4515 30 100.0 35 .............................. CACTTGGGCTGGCCTTCAACGCCGCCTCGCACTAC 4580 30 90.0 38 ........TT..T................. ACTACGGGGTGGTGAGCTCTGAGGCGTCCCGCGACCCA 4648 30 90.0 0 ...............G...A...C...... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.7 35 GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Left flank : GGTCGCCTACGACGAACTTCTGTACCTGGAGGCTCTCAAGGTGACCCGGGCCTGCCTGGAACACGAAACCTACAAGCCCTTCCGGATCTGGTGGTGAACCGGCCGTGCACGTTGTGGTCGTCTACGACACCGCCGTAGAACGCAACCCGCAGATCCTTCGGACCTGCCGGATGTACCTGCACCACGTGCAGCGCAGCGTCTTCGAGGGGCAGTTGAGTATGGCTCAGCTCAAACGCTTCGAACGGGCAGTCAAGGACGTCATCGATGACGGGTACGATCACGTTCTCGTCTACACGTTTCCGCCAGGTTCTGTCCCACAGCGCCTGGCGTGGGGGATCACCAAACCGGAGCCGAGCGATATCCTGTGAAGGAGACGACGATGGTACTTGGGGGCCGCTTTTCAGCGACACACCGGGCTGCGCTGCACCACCGGAGGGTCGCTGAAAAATACGGCCACAAGGGCTTCGCTGTAAACCTGGGACCTGCGACTTTACCGTCGG # Right flank : CCTGTGCGCGGCGGCCAGACTGACAGGCCGGCCGTGCTCCTCACCGCCTACGGCGACCCGCCCGAGGTCGTCACAGCGCGATGGCCCGCGAGGTGTTCGGTATCGACTGCCATGTCACCGAAGACTCTGAGACCGGTGCCCCTCTGAACATCCCTAGGGCACGTGCCAACCGAAGTGTCTGATCGGTTCGGCATCGGGTCGCTTGTCAGGAGCGTTGGCACCGTTCCGACCAGAGGCCGCATCGGCAGGAATCCTGGTCTCATGCCGCCCCAAACGCAGAAGCCACCGCCTCTGGTCAGGTTCCATGCCCAACTCGCTGTCTGCCGTGCTCCCTGAGTATTGATCTACTCCAGGTGATGCCTCTGCCACCCTTGGCATGCGCGACGTGGACCACTCTTGAGCAAAGGTGTACCGGATCGGTCCAAGCCCTTGGCCTGCTAGTGCTTGAACCTCGCGACTGCGTACGAGCACCATCCGATGGGGTGGGGGCGTGCCCGGTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 6572-6421 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000051.1 Nocardiopsis sp. MG754419 scaffold_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6571 29 100.0 32 ............................. GGCCGATCGCACAGGGGGCAGGGGATCCAGAA 6510 29 100.0 32 ............................. CGGGTGATCAGGCCACCGACGATCACCATGAT 6449 29 93.1 0 ..............C......G....... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CGGCGGCGCTTTTTGTGCGTTGGGGAGGGGTAGGCCGGGCAGGACTCGAACCCGCGACCCAGGGATTATGAGTCCTCAGACCGAGCCCCAGCCACACCTGCCCTGACCAGTGCCTCAGCAACCTCAACGTATCCACGTCCGCAAGCTTCAACGTGTATTCACCGTACGAGGTCGTGGCTGCACCCTAGAACAGCTCTGGAGCGATCACAAACCCCATCGCCAGCCAGCGGGGGCGGCTTCTTTCCCGCCTTTCAAGAGCAGGAAGACCAGCCCTCCGCAGACTCCACCACCCAGTGGCAGCGCCACTGAGCCCCTGCGGCGAAGGAGAGCCTGACAACGGGAGCACTTGCTCGGCCAGTCAGCCGCCGCCATGGCCATCGCGGGGCACTGCTCGGTCGGAAGTACCAGAGCAACCAGAACCAGGAGCGGGCGAACTGTCCGTTTTTCGCCAACTTGCAGATATGGCCCCTACCAGGTCGCATTCTCGCAAGTCATCGAGA # Right flank : CGCTTCCGGTCCGCCATGGCGAATGCGTCCCCCTGCTTCCGACACACACGGAGGAACCCGTCAACTACAGGTGATGCAGACATCATCGCAGTTCAGAAGATTCGCACTGGGCACTCGATAGCCCTCGGTTCCGCGCATGGTCCGAGTCTTAGGTGTCAATCCTCACGCGGCCCCCTGGGCTCATAGCCCAGCGTTTCAGTGAGTCTGGTTACTACCGCCGGCAGCTGCAGCACTTGGTTGTCGGAGGATGCGCGCAAGCTCATCCCAGGAACCCTCGATCCCCACTTGGAACTCGCGCTTCACGTAACCCACAGAACCCCTCAGCATCGCTGCAGGTTGGTTACACGCGAGCGCTCCGCCGTGTTAGCTGCCGTCCCCGGCTGACCAGCATGTTCAGGCCGGTCCATGCCGCCTCACCTTGAAGTGAAGCCACACCGGGGCAGCGTTCTCTGCTTCCACAACCCCCCGTGTTGGTTGAACCACTCTGGAGATCATCGTCA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61140-62940 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000010.1 Nocardiopsis sp. MG754419 scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 61140 30 96.7 31 .............................G GACGCTTTCGTGCGGCGGTCATGGTGGGCGC 61201 30 96.7 31 .............................G CCGAACCCCCCGCTCACACGGGCGAGTCTCG 61262 30 96.7 31 .............................T GTGTGGAGTGCCTGACCACGCTCGCGGGGTC 61323 30 100.0 31 .............................. GGCCACCGCAGATGGCCACGGCCGGCCGATG 61384 30 96.7 31 .............................A ACACCCGGCGCTTCCACACCGGCCCGAGCCG 61445 30 96.7 31 .............................G GCACCACCCGCCCCCGCGGTGTGGTCACCGG 61506 30 100.0 31 .............................. TCAGCAAGGCGGCGCGCAACCTCCGCAGCGC 61567 30 96.7 31 .............................A CCCCGCCACCATTGAAGTCGATACCCATGAT 61628 30 100.0 31 .............................. ACCGCTGGTGGAAGTCCGCGAACTTCCGCGA 61689 30 96.7 31 .............................A CCTACACGGACCCCGGCGGCGGCATCCGGTG 61750 30 96.7 31 .............................A CGTGCGCGTACATCCGCCGCAGGGAGGCCTC 61811 30 100.0 31 .............................. CCGGCGACCGCGCCTCCTGGCCGCTGTTCGA 61872 30 96.7 31 .............................A CGCTGCGCGCCCAACTCCCCGACGGCATCCG 61933 30 96.7 31 .............................A TCCCCCACCCGGGTTGGGGCGAGCAGCGCAG 61994 30 96.7 31 .............................G AACAGGTGGTCGCCGTCGCGCTCGGAGTGGA 62055 30 96.7 31 .............................G AACAGGTGGTCGCCGTCGCGCTCGGAGTGGA 62116 30 96.7 32 .............................T CCTCGGAGTCCTCCTCGAAGCCGACCGTGAGA 62178 30 96.7 31 .............................A AGGTCATCAAGCCGGCGTTCGCGGGCATCCG 62239 30 100.0 31 .............................. CATGGCTGTTCGCCATCCCGGCCTTGGCCGG 62300 30 100.0 31 .............................. AGGTCTCCGGCCCGGCCGAGGAGCCCGTCAG 62361 30 93.3 31 T............................A TCGACCCCTTCGCCGTCAGGTGCTGCGGCTG 62422 30 100.0 31 .............................. CTACGATCGCCGGGTGGCACTGGATGCCATC 62483 30 96.7 31 ............................A. AGGAACCGAAGCGTCGGGAACGCCCGAACCA 62544 30 96.7 31 .............................T CGCCCGACGGTCAGCACAGGATGCAGACCGG 62605 30 96.7 31 .............................G CGTCCTTTCGGGGACACGGCAGGCCCATCTG 62666 30 96.7 31 .............................A GGCCAGCCGACACGAACAGGAGCCGCTTCTG 62727 30 96.7 31 .............................A GGCGCTGCAACGGCGGGAGGGTCTCCCACTG 62788 30 100.0 32 .............................. AACGGGTTCCTCATGCCCCCCTACCGTGTCGC 62850 30 96.7 31 .............................G CTCGTGGGGACGGTCATAGCGCCGCCACAGC 62911 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 30 30 97.6 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CAGAATCCCGAATTCCAGACCAAGCAAAGTCAGAAAGCAGGATCAGTGACGCATCCTATCCCCGAACCCCGTCGGTCGGCTGAGCTTGTCCACAGGTCGCCTCGGCGTCCGCTGTCTCCCTCGGGGCCCTTCTGTGCGGCGTGTGGGCATCGCACCTGCCGGTCTCTGCGAGCGCTGCGCCTGCCGTTGATAGGCGGGCATCGCTGCGAGTTCGCGAAGGAGCATCTGCGTGCGGCTGCCGTCCAGGCTCGTCATCCACACTTCGTCATCTGGTTCGGGGAGTCCTCGCAGGCCTACTGGATCGCTACGGCCGAAGGGCTGAGCGAGGCCCGCTCGGTCGACGAACTTCTGTTCCTGGTGACCCCTGCACGAAGTTGACCCTTCACCGCTATCTTCAACGTGTGAGATTTTCTCGTAAGGCCTGCGTGTCTCATTTGTCTGTTTCTCAACAACTTGCAGATTTGGGCTGTTGCCCGGGATGAACGCGCAGGTCAACGAGA # Right flank : CACGCCGAACTGGTCGGGATGCTCGCACGGGGCACCGTCCCTCCTCAACGGGGACGAGTGCTCCATGCGGCCCTGGTCGCGAACGAAGGTGTGCCCACACCGATCCGGGACGGGCGGGCCTCGGCTCGCCCGCCCCCCTCGATTCACTCCACGCTGAAGTCGGCCACCCGGATGGGGGACGGCGTCGTCCCGGTGCTCGGTTCCTGGTAGAGCACCGAGAACACCCCGTCCTCGATGAGACGGTCGTCGTCCACGAGCACCTCACCGAAGGCGTCGAGCCCGTCGTGCACCTTCGTCCAGTCGCTCCAGTCGCTGTCTGCGGTGGCCGCCATGATCCGACCGCCGGGCAGCACGACGTAGGCGTTGTCGTCGGCGTCCATGACCAGCTCGGAACGGCCGAAGGCGTCCAGCGGCTCGGGGATCTCCACCTTGTTCCACTCGCCCGACGCGTCGCGGTAGAGGTGGAACACCCGCCCGTGCTCCCGGCGGTCCACGGCGAA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5421-4868 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000165.1 Nocardiopsis sp. MG754419 scaffold_164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5420 32 96.9 32 .G.............................. ATCAGGTGGGCCCTCACGCGGCCACCGCCAGG 5356 32 96.9 32 A............................... CTCATGGGTCTCTCTCGTGATGTGGCGCCTCG 5292 32 100.0 34 ................................ CCGGGGTGTCCGGCCACCCGATCGAGCGCATCGG 5226 32 96.9 33 .T.............................. ATCCGGTTCACCAGTGCCGCGTGCGGCACTCCG 5161 32 100.0 35 ................................ GACGGCGTACTGGATCCGCACCCGCAACTTCCACC 5094 32 100.0 33 ................................ ATCCGGTTCACCAGTGCCGCGTGCGGCACTCCG 5029 32 100.0 33 ................................ CCAACCGATTCCGCGACGCCGAGAAGCGCACCG 4964 32 93.8 33 AG.............................. ACGACGGCGGACGGAGCGGAGACCTCGCCGAGG 4899 32 78.1 0 .T.C........A..T.A.......CG..... | ========== ====== ====== ====== ================================ =================================== ================== 9 32 95.8 33 GCGTCCTCATTGCCCCTTCGAGGGGTAGCAAC # Left flank : CCCCGACGGGTAACTGACCTATGCGGCCATGATGTGAGCAACGAACTCGGCCTGAGCCCGGGCGCTGTTGCTGAGGAAGCGCGCGGCGGACATGTCGGCCCGCCCGGCATTACTGGAGCGCTATCCGATGCTGCTCATGGTGGATATGAGTGTTTTGTCTCTGGGCGGGGCGGGGCGGGTCCGCAGTTGGCGGTCTCGAATGACAGTTGTGGGGCGCGTCGCGGCAACTGGTAGTCGGGGGCAACGTCTGCTGCGGATCCGGTTCTTTCGTGGCTCAGGTAGGCCTCACCGATTGCCAGAAGGCGCGGGGGAGTGATTTCGGGCCGCGGCCGTTAATCGGGGTGGTGGCTTGTCGTCGTGGTGGTGTTGGATGATGGGCGTGGTTGAGTCCGAAGGTGTTTTCAGCGACACGCCGGGGTCGTGTGCGCTACCGACGGATCGCTGAAAATCTTGGTCCGAATCGATGAGTCGCATGTGGTGTGGCCAGGTGCTTTACCATC # Right flank : TTTGGTTGTGGCCGTGGCGGCGGGTCTGGGGGCTTCACAGCAGAACGCAGGATGATGGCGCCCGCTAAGGCTTTAGGCGACCTTGTGCCAGATTCTTTCGTTTTCATAGTTCCCCGAGCTGCTTTTTATCGAACATGTTTACGATTAACGATGCCCCTACCAGTTTTTCTTATCCGATGTGATCGAAACGCGCTCTTTGGCCTGGGTCGGCCATCGTGTTGATCCGAGACCTCTTTTGTCGGTGATGGTTCCTACCGTGATGCACCGTCACCTGATGTTGAGTAAGGAGGTCACCGGTGCGTCTTCGCGTAGCGGTCCATACCAGGGCCCCGTCCCTGCAATGGAGTGAAGTGCTGCGCCCAGGCCGCGGCCTGGTCTATGAACTGCTCTCCTTCGGGGCACCGGAGCTCGGTGCCCGGTTGCACGAACGTGGTTGGGGGGAGACGGGCATGGTCCCCTTCGGCCACAGCGCCCCCACGTTCCCGTCCACCACCCGCACA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTCCTCATTGCCCCTTCGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 11988-13605 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000165.1 Nocardiopsis sp. MG754419 scaffold_164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11988 29 100.0 32 ............................. TCGGCGCAGATGGTGTTGTGGTCGGAGCGCAA 12049 29 100.0 32 ............................. GTCACGGAGACGAGGCGCCCCCACCTGTATTC 12110 29 100.0 32 ............................. CGAAGGAAACGACCATGCCCCCCTGGCAGAAG 12171 29 100.0 32 ............................. TTGCCGCTGCTCGGCTTGGTGGAGGTCAGCCG 12232 29 100.0 32 ............................. CCCTGTTGTCCGGCATCTGGGAGGACCCCCGA 12293 29 100.0 32 ............................. TCTGGTTTGGGCTCGTGGCCAGGCCCCGGGCA 12354 29 100.0 32 ............................. CTGTTCATGAAGTGGCACCCGGTCGGCATCAT 12415 29 100.0 32 ............................. TGATGGGCATCACCGAGTCCGAACGTTGCCCG 12476 29 100.0 32 ............................. CGCCCGGTGCCAGCGGCGGCGGTGGTTGCCGC 12537 29 100.0 32 ............................. CCGGGCGCGGACCGGGCGGAGATCGACAACCA 12598 29 100.0 32 ............................. CTGGGCCTGCACACCAAGGCCCATAGTGCGTG 12659 29 100.0 32 ............................. GCCTGATTGATGCGCACGCTCGCCATGGCTCA 12720 29 100.0 32 ............................. ACGACCTACCCGGCGCCGAACCAGACGACCGG 12781 29 100.0 32 ............................. GGGGAGTGGGACGAGGCCGGGAACATCACCGC 12842 29 100.0 32 ............................. GTCCGTGGGCTGCTCACTGCAAACCGCGGCGA 12903 29 100.0 32 ............................. GGCTGGGCCGAGGCCGTCGGCGGCGACACCGA 12964 29 100.0 33 ............................. CCGGGCCAGGGTCTCGATGGTCATGACCAGGGC 13026 29 100.0 32 ............................. TCAGCCACGGGGCGTGGTACCAGGTGATCTCC 13087 29 100.0 32 ............................. GAGGAGTTCAGCGCCGCGTGGGAACCGGACGG 13148 29 100.0 33 ............................. ACCGTGCCGTCGCCGTAGGGGCGGGTGGTGTCC 13210 29 89.7 32 TGA.......................... GCCTGCTCGTGCTCGGGGTGGTCGGGGGTGTC 13271 29 100.0 32 ............................. GAGTCGATCGGGGAAGGGGTGACCAACGAAGG 13332 29 100.0 32 ............................. GCTCCGGCCGGTACTCGGCCTCCCGCACAGCA 13393 29 100.0 32 ............................. CTGTCCGATCGGCTGGTCAACACCGACCAGGG 13454 29 93.1 32 ....................A....T... GTCACTTCGGGGATGTCCGCGTCGTCAGGGTC 13515 29 96.6 32 .G........................... ACGGTCCCCGGGCTCCGGTCTGAGAATGTCGG 13576 29 89.7 0 .........A...............A..G | G [13599] ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.9 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : ACGAAGCCGTAGCCACCCGCATCCGGCCGGATAACGAGAAAAGCGCCGCTGGCCTGTATCCGCAGGTCGGCGGCGCTTTTTGTGCGTTGGGGAGGGGTAGGCCGGGCAGGACTCGAACCCGCGGAGCGATCGCGAACCACATGGCTAGCCAGTGGGGGGACGCCTGCTTACTCCACCTCCTTAGAGAGTAGGAAGACACAGCCTCCGCAGCCTCCGCCAACCGACGGTCGCATGCGTCGAACTGGGGAAACAGTACGGAGGCTGATGTCCGTTCTCAGCCTCCGCCTAGCCTCCGCAGGCTCCGCATAGCCTCCACATCACAGGCGGCGCCAAGGCCCCGTGAGCGCATGCTCAGCCCGCACACGGAACCTGTAGCCGCCGTGGAGGATGTGCGGTAAGAAGTATCAAGGCCGCCAGAACCAGGCAGGGGTGAAATGTCCGTTTCTCAACAACTTGCAGAAATGACGCCTAACCGCTGAAAGAACACCAGGTCAGCAAGA # Right flank : GAGTCCTATCCGACGCCGAACCAGGCAACGGGCCTACCCCCCTTGTGCAAGCAAAGGCCACCAGCGATCGTCCGCTTTTCAGGCGGTCTCACCAACCTCAGCTGACCCCACCCTGAACTGCGCTAACATCCCCGTAGCCGTCGCCGTGGCGAAACTTGGACGCACATTGGCCGCAGCAACCTCTCGAACACCCCTCTCGGGCGATGCCGCATCGGACTCGAACAGTCCACAACCTCCAGCGACTTTTAACCATCCCCGGAACAGGAGACCCAAATGGCGTTTTGGGACGTTCAATTGGGCCCACACTACGATGGTGATCCCCGATCAGGAGAGGAAGGGCGCGATATCGGAGAGATCATCTGCCCGATCTGCAACAACTGTATGGCGCGACTGTTCGACGCTCCCGAGGGAGTGAGAGTCTCAGCATGGATCCCATCCGGTGGGAACCCTCTCGGCGACCCAACCAGCCGACGCATCGGGTGGACTCTAGCCGGGACCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4842-5174 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCZ01000169.1 Nocardiopsis sp. MG754419 scaffold_168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4842 30 100.0 31 .............................. TCCCGGCAACCATCGGTTGCCGAGGCGGTAG 4903 30 96.7 31 .............................A GCCCGTACCAGGTGGGCATCACCCACTCCGG 4964 30 96.7 31 .............................T AATTCACTCTGTGCACACGGCGGTACTTAGT 5025 30 100.0 31 .............................. CCCACCCCGCGTGAACCATCCTGTTCACCAT 5086 30 93.3 31 ........................A.A... CCCCGCCCCTCCCACACGGGAGAGACGGGGC 5147 28 86.7 0 ............--..........A.A... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.6 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGGCCGCGCCACCACCAAACGCCAGGTCGCCCGACAGTTCCCGTCACAGCACCACGACCCCCGCGCGCTCCAGGGCGACCGGTCCCGGCCCGCCACCCCCCAACCCATCTGCGGCTGTGGCCACAACCTGGTCTTCCACGACCAGGAGACCAAGCGCTGCCAGACCCAGGTCGTCATCCCCGGCCGGTGGACCGGACAGAGCAACTCCACCTATCGACAGTGCATGTGCCAGGGCTACCGCGGTCCGGTCCCCGTCGACGAGTACTACGCCCCCGACTACCTCGACGGCACCGGCTCCTGACCCCTCCCCCGTTCGACCACGTCCACGCGACGAAGCCGCACGAGCGCTGATTCGGCCTGCCGAGGACCCCGTAGCCGCCGTAGAGGGTGTGCGGAAGAAGTACCGAGGTCACCAGAACCAGACAGGGGCGACATGTCCGTTTCTCGACAACTTGCGAAAACGACCCCTCAACGCTGACGGAACACCAGGTCGGCGAGA # Right flank : GGGAGGCGCGCGCCGGCCGGGGCGGCTACGCCGCGGTCGAGCGTGTCACAAGCTGCAACGGGCGTCGGTGGGCGGGGATTCGAGGTCGAGCAGATAAGCGTCGACCACGTCGTCGACGCACTCGCTGCCGCCGAGGAGGTAGGCGCCGTGCTGCTTGCCCTCGACCGTGAGCAGGCTCGCGTCGAGAGCCCGCGCCAGCGCGATGCCGCCCTCGTACGGCGTCCCTGGATCCCCGGTGACCGAGACGACGAGCGTCTCGGGGAGACCTTCGACGTCGGTGAGCCAGGGCTCGTCGCGGGTGGGCGGTGCGGGCCACGCCTCGCATTCGCTGTGGTACTCACCCGCCGTGAACACGTCGAGGGCGAACATCGGAGCCACCTCCCCGACCGAGCGCGCGAGCGCGGTCTGCTCTTCGGGCTCCAAGCGAGGCTGATCCATGCAGCGCACGGCGATGTTCGTGTCGAGGTCCGTGGCGTAGACGCCGTCCGCGGTGCGGGCGT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //