Array 1 77193-76926 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBW01000005.1 Cronobacter dublinensis strain SX10 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77192 28 92.9 32 ...........GG............... GTTCCGACGTGTCGGATGTGTTCATCCTGTTT 77132 28 100.0 32 ............................ AGAATAGAACTCACTGATTCCAGTGTGCGGGT 77072 28 96.4 32 ............G............... TCGTAGTTAACGACATAGGCGTCGCCACTAGC 77012 28 100.0 32 ............................ ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 76952 27 85.7 0 ...T.......T..........-.C... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCTGGGTTACAGGATTACTGCCAGAGCAGCGCAATATTACTCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGCAAAGGCTGGCTGACGGAAGAGGCCGCGCGGCAACGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGGATCTTTATCCAGCACGGCGAGCTGCTGGCCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACAATTCCCTGGTTCTGACCTTTTTTAAAATGCCTCGCTAACCTCTTGATTTTTATCATACGCTGGCGAGGCGCTAAAAAAGGGGATACGGCATCAAAATGCATAACAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : TCGTATTACTGCTCCGCCAGACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATTAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCCGCGCTGCTGACGCCTGACGCCAGCAGCCGCATTCAGCTCACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACTACCTGGGGCTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCAAGCCGGTGAATGTCGAGATCCGCAATACGCTCGCCGAAGAGACGACGGTGCACTGGCACGGGCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCGTCATCGCGCCGGGGCAGACCCGCAGCGTGAGCTTTACGCCGGAGCAGCGCGCCGCGACGTGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88336-85664 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBW01000005.1 Cronobacter dublinensis strain SX10 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88335 28 100.0 32 ............................ ACCGCCATAAGTCGCTACGCAGCGCAAAACGG 88275 28 100.0 32 ............................ GAAAAACGCTTCCTTATATATACGACGTTGCG 88215 28 100.0 32 ............................ AGCTCCCCTCCGATTTTGCCGAGCACGTCCTC 88155 28 100.0 32 ............................ TTGCGCGGGCGTCCGGGGCGGGGCTGCTGTCG 88095 28 100.0 32 ............................ TGCGGAAGTGGTGATATATTTCCGCGCCATAC 88035 28 100.0 32 ............................ TCCTGCTTTGTCGCCACCGCGTGGCCGCTAAT 87975 28 100.0 32 ............................ CGCTAGCACTATGGCCACAAAGAACAATCCAC 87915 28 100.0 32 ............................ ATAGGCAATCTGACTAAACCAGTAACGCAAAA 87855 28 100.0 32 ............................ ACTTCACGGCAATCGATGTGGTCGCCTTTCAC 87795 28 100.0 32 ............................ ACCACCCCCACCCAAAAGCCCCATGCCTGCTA 87735 28 100.0 32 ............................ AGAACGTCAATACCCGCTCTATGCCGGTGGAA 87675 28 100.0 33 ............................ CGCCAGTAGCTTTGAATGGGCCGAGAGCCTCAC 87614 28 100.0 32 ............................ CTCATTGCTTCCGGTTAGCCCGCCCAGTGCGG 87554 28 100.0 32 ............................ TCCAGATATTCTTTCAGCTCGGGAGTGCCGAA 87494 28 100.0 32 ............................ AGTAACCGCCGGTAATTTTGCTCACTGCGTCA 87434 28 100.0 32 ............................ TCTTCAACCGCGGGCGTGGTCGATCTGACGCG 87374 28 100.0 32 ............................ TGGAAGCGTCCGGGCTCGGGAATAACCCCGCG 87314 28 100.0 32 ............................ TGGCGGCAATATAGCGGCTAACGCTAAAGACC 87254 28 100.0 33 ............................ TGGTCGACGGGCAGCGCAGTTACGCGCCACCAT 87193 28 100.0 32 ............................ AGTTGCGCGACGACACCGAGCCCGCCGTGGGC 87133 28 100.0 32 ............................ ACCAGCGATTTATTTAATGGCTCGCCTTTTTC 87073 28 100.0 33 ............................ TCAACAGCCCGATGTACTACCCGCCGGTGACAA 87012 28 100.0 32 ............................ CCCCAGGAGCGACAAAAAGACCGCTGAAAGAA 86952 28 100.0 32 ............................ GCAAAGATGCCGGGCAGGTCAAGCTGTCTGCC 86892 28 100.0 32 ............................ TGATATCCCAGCACGCGCTGGACCGCTTCGTT 86832 28 100.0 33 ............................ CGGCTGCGTGGGCGCCGAGCAGTCGATCAGGTC 86771 28 100.0 32 ............................ TGCGTCGACATTTCGCCATTCTGCATATTGCC 86711 28 100.0 32 ............................ TGGGCAAAACTGTTAACCACAGCAACACTGCC 86651 28 100.0 32 ............................ GTACAGCAGCGGAGGAGTGTTCAAAAACGCAC 86591 28 100.0 32 ............................ ACCGACTGAACTGATTTGAAGTTGAAGGCGCG 86531 28 100.0 32 ............................ AGGAAGGAGCATGTGAAGAAATGCGACGCTGG 86471 28 100.0 32 ............................ TTACAGAATCAAATCAATTCGCGCGGCGAACA 86411 28 100.0 32 ............................ AGGACGGCTTTATCACCCCGGCCAATCAGGGC 86351 28 100.0 33 ............................ AGGGATTCCGGCTGGCTGGCGTAGCGGAGGTAA 86290 28 100.0 32 ............................ TGCTCGGTGGGGGTATCGCTGGCTGATACAAA 86230 28 100.0 32 ............................ TGATTCGCGTAGCGCGTCGATACGCGTGCCGT 86170 28 100.0 32 ............................ TCCTTAAAAAAGTTTTTCGTGCTTACCGGTCT 86110 28 100.0 32 ............................ ACTCTTGCCGCTCACCCGCCAGGCGTTCCACC 86050 28 100.0 32 ............................ AGCGGCGCGGAAATCTCTGACGGCACGCTCAA 85990 28 100.0 32 ............................ TGGCGGATCAGCATCGCGATGTATTCGTTGAG 85930 28 100.0 32 ............................ GAAGGGGAACTGTCTTTATCTGACCCTTAAAT 85870 28 100.0 32 ............................ CTCACCTGCATCTGGCGGCTTTCATGCCCTCC 85810 28 100.0 32 ............................ GTGCGCAGCCAGAAAACATTCAGGAATGGTGT 85750 28 100.0 32 ............................ GTTAGTCGTGGTTTCGACCACGCGCGCTCCGG 85690 27 92.9 0 ....................-...A... | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCCATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAGCGAAAAACCCGCAGGTTGATATCCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACTACCGCTGTGAAATCTGCCGCATAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGCGCTCGACTTTCACGTTTAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : ATGCCATTTTTAATGCCATCATCGAAGGCAAAAGCCCATACCTAAAGATTAATGAATAAACTTCTTTATTTATTCGTGCCCTTTGACGTGGCGGAGTGCATGACGGCCGTGCGCCTGGGCTGATATATTTTAAAAATTAAAGGGATGTCACGATATAGTGTCTTAACTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATATTTCCCCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACTCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACTGATGAAGGGAAAGAGTCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTTACGCAGGCGGCTATGCGGGAATTCGCCCGGGCGGGCGTGATGGTGGGTTTTTGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 971006-968537 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBW01000001.1 Cronobacter dublinensis strain SX10 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 971005 29 100.0 32 ............................. CGTCCAATATTACACACGGAATTATCCGAACT 970944 29 100.0 32 ............................. AATTGACAGCCCGCCCACCTCAATTTACTGTA 970883 29 100.0 32 ............................. CGCGCAACGTTAGTCTGTCCTGTTAGGTCGTT 970822 29 100.0 32 ............................. CCGGTATTAGACGGCATCAAACCAACTTCTTC 970761 29 100.0 32 ............................. GTTTTGTTGTATTGCTCTTGGCTAATCTTTTT 970700 29 100.0 32 ............................. TTGAGACTGCTGCTTTAGCGCCTCAAGTTTCT 970639 29 100.0 32 ............................. CTCTACAGCGTTGTTGGTGATATCGCTGATGA 970578 29 100.0 32 ............................. TCAGGGGATCTGTTTGCGGACCAGCGTCATCA 970517 29 100.0 32 ............................. AGCAATAAATTTCATAACCTGCTTATTAACAA 970456 29 100.0 32 ............................. CGCTGTTGAACGTGCTGTTTGCGTGCCGCGAA 970395 29 100.0 32 ............................. ATATCCCTCGTCGCATTTATACTCGTAGCTTT 970334 29 100.0 32 ............................. CGCCTGCACGTCATGCAGTGACAGATCGCTGA 970273 29 100.0 32 ............................. ACATCATCAATCCCTTTGTGGCGTCTGTAATT 970212 29 100.0 32 ............................. TTATTTAGATCAGCTGTTGGTGCATTCAGTTG 970151 29 100.0 32 ............................. CTCGGGCTGCGAATTAACGGCGCGGCGCCAGG 970090 29 100.0 32 ............................. TAACGATTACAGAGAACGGCCTTTCTGTTCCA 970029 29 100.0 32 ............................. TAATAGAACGCGCGAACGACCTCAACCAGATA 969968 29 100.0 32 ............................. TTTTAAACAACGTGGTTACGGTGAGGTAGAGA 969907 29 96.6 32 ......T...................... CCATCGCTACTAATCAGGTAGCGCCATGAACG 969846 29 100.0 32 ............................. CTTTCTGGCGGGAGTTGATGGTTTTCTTCGGG 969785 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 969724 29 100.0 32 ............................. ATATTTTTCTATCTCCACTTTGCCAGCGGCGA 969663 29 100.0 32 ............................. CATTGCCATCGCCGCTTGCCCAGAGGTTCTTT 969602 29 100.0 32 ............................. GTACTTCATCCACATCACCAATCGCTGCTGAT 969541 29 100.0 32 ............................. AGACGCGCCATTGCGCCATTTGCTGGCCGGCG 969480 29 100.0 32 ............................. GGCTCACGGCACGCGTATCGACGCGCTACGCG 969419 29 100.0 32 ............................. TGCGTTCTACCTGATCCAGTGATTTAAAAATT 969358 29 96.6 32 ............................T CCCGGATACCTGCCACGCCAGCGGGCGCGTTC 969297 29 100.0 32 ............................. AAAATAAATTGCAGCGAACCCTATCTGACAAA 969236 29 100.0 32 ............................. GTTGGCGTCACTGGTGCTGGAGGTGCTGGAGG 969175 29 100.0 32 ............................. CCCCGCATTAGCGGGGCTCCTCCCGTCTTATT 969114 29 96.6 32 ..............T.............. CCGCCAGAACTACAGGCGGCGGCAATGCAGAG 969053 29 100.0 32 ............................. GACGGGCACCGGTTAATGCAGTGCCGTTTAAA 968992 29 100.0 32 ............................. GTTTGTGGTCGTTGTAAAGGCACAGGCCTGCG 968931 29 100.0 32 ............................. CGCATCTGGGACGACGACTGGATCACGCCGCC 968870 29 100.0 32 ............................. CAGACCGAGAATATCTTGTTACCGAGATAGGC 968809 29 100.0 32 ............................. TTGCTTCAGCTCGCGTGCGCGCTTGATTGAAT 968748 29 96.6 32 .A........................... TTCTTAAACAGATACGGCCAGACCAGCACGCG 968687 29 96.6 32 ...........................A. GTCGCGGAAACCTACCTCAACGGGCGCGGCAC 968626 29 100.0 32 ............................. ACCCCCGGCTATCACTGGGTGGTTGTTGTGGA 968565 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTTAGCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCATGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAACCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTCAACCACCCGACAAGGCAAACATTCGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCATATTGTGCTGACGCATCTGGATTTCGATCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //