Array 1 3108-406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXC010000002.1 Enterocloster citroniae strain J1101437_171009_D5 NODE_2_length_390144_cov_34.6768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3107 33 100.0 34 ................................. TATGAAGGCCGAGAAAATCTGTGGTATGGCCCCC 3040 33 100.0 35 ................................. ATGGGTATGTTTTTTATATAGCAAATGATCATTTA 2972 33 100.0 34 ................................. ATGGAAATTGGAGATGGACTTGTATCTCAGGTGT 2905 33 100.0 35 ................................. ACTGTAGATAGTGAAGAACAGTTTACTGCTATATT 2837 33 100.0 36 ................................. ACACCGTTATCCGCTATGATACCAAGCAGGGTATTC 2768 33 100.0 33 ................................. CAGTCCAGGCATCAACTGTTTGGATCCCATCAG 2702 33 100.0 34 ................................. CTGTTTGATCGTAATAAGGTTGGTGGTGATCCGC 2635 33 100.0 33 ................................. CGGTATTCCTGGTGCTGCTTATAATCACGTAGA 2569 33 100.0 35 ................................. CATTTTAATTATCCTCCCTTATAAAGCTATTCTCT 2501 33 97.0 33 ............A.................... TTCACAATGGCGATGAACCTTACACCCGCAGTC 2435 33 100.0 35 ................................. ACTGTTACAGGATTCAACAAGGAATCAGGTCGGGG 2367 33 100.0 35 ................................. TACCGGATCATGGCAGAATGCAATGCCCTTGAACC 2299 33 100.0 36 ................................. ACCTCCTATTAATTCCGAATTCCGAATTGGATAAAC 2230 33 100.0 33 ................................. ATCATGCAAGCGGTTGAAGAGAAAATAAACAAT 2164 33 100.0 34 ................................. AATCCGGTTAAACTCCCTATAATCTGGCGTAGGC 2097 33 100.0 35 ................................. CTCAATATCCGCAATGTTCTGCTCCAGTTCCGCCG 2029 33 100.0 33 ................................. AGCTATATCTGGATGGTCGTCCGCTTGAAGAAT 1963 33 100.0 33 ................................. TCAAAATAAATGAGAATGATGTGGCATAGGGGG 1897 33 100.0 34 ................................. CCATCACATCTCCCGGCTTTAAGCTTCCAGGGCT 1830 33 100.0 34 ................................. TGGAGAATCCGGAACCATTCATCATACAGGTGAA 1763 33 100.0 33 ................................. AACTCCATCTGGTATCTTGCTTCCTGACGTTGG 1697 33 100.0 33 ................................. CAGAATCCACGCCAATGATATACAGCCAGCAAG 1631 33 100.0 34 ................................. AAGGGACTTAAGCTTTTGCTCTGTTTCGATAATT 1564 33 100.0 33 ................................. TCATTGGCCCAGCTAGTCGCCCCTGATACATCA 1498 33 100.0 33 ................................. AACATGTAAAACAAAGGAGGAAATCGAATGGGA 1432 33 100.0 36 ................................. TTCCTTATTTTCAAACTTAGGATAATGTCCCGGGAC 1363 33 100.0 33 ................................. CTATTACATCAGCTAATCCCATTAGTAATCTCC 1297 33 100.0 34 ................................. CATTATACATGGGGAAACGGAGGATTGCAAGATG 1230 33 100.0 35 ................................. ATTGGCCAAGGAAGGTCTTGATATCCCCAGGCTGG 1162 33 100.0 34 ................................. TCTTTATCGGATGCTACCATGAACTTAGGAAGGT 1095 33 100.0 34 ................................. GATTGTTTTAAGGCCATAAAAATGCATGGCTACC 1028 33 100.0 33 ................................. AATATGGATATCAGGGATTTTTTGCGTTTAAAG 962 33 100.0 34 ................................. TTCTAAGTAAGGCATTATTATCGATTTTCCTAGC 895 33 100.0 34 ................................. ACGGATAACGGATCCTGGAGGATCAGTGCGATCG 828 33 100.0 17 ................................. GTGTTGGAACGGGGGTC Deletion [779] 778 33 84.8 34 A.TGA...T........................ CCTGTCGGATTACCCATGCAACTTCCCTGGCAAC GAG [767] 708 33 100.0 34 ................................. ATATCAAATATCAGTTTTGTTGATTTAGCCCTTT 641 33 97.0 33 ............A.................... AATAAAACGTGTAGAAAACTGCTCCCCCAGACC 575 33 100.0 34 ................................. TCCGCATATATGAGCGGAGAGAAACAAGTAATTA 508 33 100.0 34 ................................. TCTGCGCATGGCGGTTATAAGTCCACCCATGCCT 441 33 90.9 0 ..............A.........C....C... | G,A,G [408,412,414] ========== ====== ====== ====== ================================= ==================================== ================== 41 33 99.3 34 GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Left flank : GTCCATATTCTGTAGGGAAGGTTAATGCTTATATCAATTCCTTGAAAGACTTGTTTTCTGAAACTTTAATTTGGACCTTATCTATCATTACGGAAACGAGAAGAACATTAAAACATAAAGATAGTGAAGAAATCAAAATTGTGGAAAACGATAAGCTGGAGAATTATCATTTAAGTGATCTTGATATCAGAAATTTAAAAAAATCTCTTTGCTCTCCTTAGCGGTTCAATTGTTAAGTGTATGTTTACATATTATGGGATTGGAATAAATATTGCTTTGGGGTACAAAACTGAAAGTTTGGATTAAATATTATCAGAAAAAGGGAATACAAGTATTATGGTGCGAATCCCAAGCAAACATAAAATGTCTAGGAGATTCGCACCAAAATAAAGCACATAATATTTGATTTCGAGAGAAGATGTAGTATAATATGAAAAGAGATTTGTGCATTGTGTATGAGGGTAAGTTGTATTTAATAGTAAATATCATGCATAATTGCA # Right flank : TTTGAACTTGGTAATTTTTCAATTACGATCATACCAAAGGAAAAATGTCGGGGTGTATGAATTAATTTCATATACCTCGACATTTATTGTGTCACAGTAAAAATAAACCACCTGCTCTGCAGGTGGAGGGAATATCTTCAGATAAAAGCAACTCCTGTGCTAAACTAGATGTAGGTCTGCAAACCACAAATAAAAAGCACAGGAGGTCCAAAATGGACAATAATAGTTTAGCTCATACAAAATGGGATTGCAAGTATCATCTGGTTTTTGCACCAAAATATCGTAGACAGGTAATCTATAAAGATATCAAGGCAGATGTAGGACAAATCCTTGGGACATTATGTCGAAGAAAAGGGATTGAGATAATTGAGGCACAATGCATGTCAGATCATATTCATATGCTGGT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 61848-61091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXC010000010.1 Enterocloster citroniae strain J1101437_171009_D5 NODE_10_length_164326_cov_33.8008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 61847 32 100.0 34 ................................ GACAAAAAAACGGGACTTAGAGTAAAAGAACCCT 61781 32 100.0 34 ................................ CTCCAGGGTCTTATACAGCCTGTTCTTTGGCAGC 61715 32 100.0 35 ................................ CTCGGACATCAGCAAGTAGGCAGTTTCGCCCTCAG 61648 32 100.0 34 ................................ AAAGGTGACAGGCTATATAGACGAGGCTGCTAAA 61582 32 100.0 33 ................................ CCTATGTACTTGGCCCTGGCGGGGGCCTGTAAG 61517 32 100.0 33 ................................ TCTTCCTTCTGGGCTTTGCAACCTTCGCGATCA 61452 32 100.0 35 ................................ TATGTAGTACGTAGTAAGGGGGGCATTGGCATTAT 61385 32 100.0 34 ................................ CGTCAGGCCCGATCCGAAGCATCAAAGGAATACT 61319 32 96.9 35 .................A.............. CTCCTCTCTCCGGCTTGCCCCGGCCATTCATTAAG 61252 32 96.9 33 .................A.............. TATATAAAACGATAAAAACGATAATAATCGAAT 61187 32 100.0 33 ................................ TTCTTGACTTTACGCCCTTTTGGGCATATAATA A [61168] 61121 31 75.0 0 A.T........-.....A..A...G..A.T.. | ========== ====== ====== ====== ================================ =================================== ================== 12 32 97.4 34 GTCGTTCCCCTTGCGGGGACGTGGATTGAAAT # Left flank : TGCATATCCGCCATTTTTGTGGAAGTGAGGTCAGAGTTTGCTGGTATTGATTACATATGATGTGAATACAGAGACAGCAGGAGGAAAAGCGAGACTTAGAAAGGTTGCCAAGCAATGCGTTAACTACGGGCGGCGAGTTCAGAATTCGGTATTTGAGTGTATTATGGATAATACGCAGTGTCTGCATCTGAAGTCAATATTGACAGAAATTATAGATGAAGAGATCGACAGCCTGCGGTTCTATTATTTGGGAAATAAGTATAAAACAAAAGTAGAGCATATGGGGGTTGATAAGGGGATTGCGGCAGATGAGATATTGTTTTTGTAGTGCGAATGTGAAGCATACATGAAAAGTACGGGGGATTCGCACCGGAAAAAGTACACAAAAGGTGCTTGGTTTGGGAGGGAGAGGCGATGATTTTGCTGTGTGGTATTCAAAGAAATGTATAGATGATATAAAAGTGTGATTGTTTTGTGTTATGATATTGGATATATTTGCT # Right flank : TGTAATATGACATCTATAAAAAGGTATATGGAAGATATTGATAGAGAAAGATATTAATAAAGAAAGATATAAATAAAGAAGTATCTTTGCAAAGGGATACCTCAAAAAGCGGGGAGTACAATATTTTCGGCCTAAGAATATCCTTGACAGATTGGAGACAGCAGTATTCGTCTGTTTGAAGTCATCTAAGATGATAAAATATGCAGCGATTATGGTATTTGGAGGAAAAATGGAACAGTTATCTATATTTGAGTGTATAAATGGAACAGAAGAAAATGGAACCCTTTCCACGGATGAATTGGCTGCAATTCATCCACGGATGGTTTCGTTATTTAGCGGTTGCGGCGGATTGGATTGGGGATTTAAAGAGGCTGGATATGATATTGTTTATGCAAATGATTTTGATAAGGATGCACAGAGAGTGTATGAGGCAAATTTTGGCGAGATGGACGAAAGAAGTATCCTCGATGTACCGGCAGAGGAAGTGCCGGACTGCGATA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGCGGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : NA // Array 1 133635-132591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXC010000015.1 Enterocloster citroniae strain J1101437_171009_D5 NODE_15_length_158701_cov_32.3195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 133634 33 100.0 34 ................................. CTTGCGTATGACCGCTCTTGCTTTTTCAAGTTCC 133567 33 100.0 34 ................................. CATAGGAACGGCAATCGCAACTTATTTCGTGGTC 133500 33 100.0 35 ................................. ACGAATGATGAACTTAAGCTGCTGTGGTCTAATGT 133432 33 100.0 34 ................................. ACATTGACAATCACCAATATTAGTGATATACTAT 133365 33 100.0 33 ................................. TCAAAATTCGCTACAACAATCACGAATGGCAAC 133299 33 100.0 34 ................................. ATGTCTGAGGATCTGTATGCAAAGTTCTGGATAT 133232 33 100.0 33 ................................. TCTTAAATACTGTAAATCCTCTTTGGCTCTGGC 133166 33 100.0 34 ................................. ATACTCAAAATCGGCTTGCTGGCAGACAACCTCC 133099 33 100.0 35 ................................. CCTCCCCTCCCACCCCTCATACACTCCCCTTCCAT 133031 33 100.0 34 ................................. ATCTCCATTGATAAAGGTGTCATTAAACAGCGCC 132964 33 100.0 35 ................................. TCTCAACAGGGCGCTATGGAAGAATATCTCCGCAT 132896 33 100.0 35 ................................. ATTATTAGCATGGGCAAAATAAGACCATGATTAAC 132828 33 100.0 34 ................................. ATCAATCCCGTTCATTCCCACTGCATCTGTGAAA 132761 33 100.0 35 ................................. CAGTTAATTTCAGAATGTTACCCAAATTATAAAGC 132693 33 93.9 35 ..................T...C.......... ATTAGAAATTAAAATCAGCATGCGGAATTCTGACC 132625 33 87.9 0 ............A...AA.........A..... | GT [132599] ========== ====== ====== ====== ================================= =================================== ================== 16 33 98.9 34 GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Left flank : CTCACTCGTGAGCGGAAGCCCGACCATACAGGATGGAAAGCTGGCCGGGGCGGTGACCCATGTGTTTGTGCAGGATGCCAGCCGGGGGTATGGGATTTTGATTGAGAATATGTTGGAGCATTGAGGGTGAGGGAGGATAGAGTGGGCATATAGGTGCTGTGATCCTGCGTTCTTGGCTCTTATAAGCCTTTGTCCACTCTATCTTATGGAGTAAAAATTTTTGGTGTTTAGACGAAGTAGTGAGCGGATAGAAGAAGAGATGTAAGGGGAGCAAGATTTTGAACCATAATTTTGGTATACAAATACTTGATAATGTAAGTTACTATATTGGTGCGAATGCCAAGTGCACATGAAAAGCATAGGAGATTCGCACTTGGTTTTTAAGAAAAATTTGAGAAAAGAGAATAATTTAGATATCATGGGTTGTAAAATGATTAAGAGAGTTGTATGATTTGTATAGAATATGTCTTGTATAAAAAAGAAAATTAGACATATTTGCA # Right flank : CCATTGTAATATTGATGTCGCTGCTCCCTAAACGGTCAGCCCCAGCATAGGTTAATTCAATCCGAATAAATTAAGTCATATAATATAAAAAATATTAAAACATCAGATGAAAGCACTATTCTGATAAACCCGACTATCCTGTTCTTCCAGCGTACCGAATAAGTGATCGACATGCAAAAGAAATCAAAGAAATCAAATCACCCCAATACAAAGACCACATAGCCTCCCTCCATTAATTATTCCAATACACCCATCTTCCCAAAATAACATCTCCAATTTTTCCCAAAAAACAAAAACATCACTTCTACAATAAAGAAAACCAAACACACTCCCATTCCAATAACCCAAAAGTAATCACACGTTCAAACATCATATGCCTCAATTATCCATCACACTAAAAAGCATTCAACGATCATATACGGATCCTTCACCTATGTGGCAATGGAACAAAAGAAATTTTTATTCAGAAGTGGCGCAGCCTGCCTCAGAATATCATATCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //