Array 1 44130-43044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEA01000023.1 Bacteroides fragilis str. 1007-1-F #10 gbf10071F10.contig.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 44129 35 100.0 33 ................................... CACAAACCGCCGATAGTGAATGGACTAAGCAGT 44061 35 100.0 36 ................................... ATATGATAATCGACTGGGAATGTGCTAGATACACTA 43990 35 100.0 36 ................................... TCAAGTCACTTCCGAGGGTGCGCAACTGATTGATGT 43919 35 100.0 33 ................................... AAAGAACTTTGACAGCAGAAGGAAAAGACATGA 43851 35 100.0 35 ................................... TCAGGGATTTGAATGAAGACCCTCACAGCTATAAT 43781 35 100.0 37 ................................... GAAACCGCAATGGCACAGTATCCCGGACAGGTTTTGT 43709 35 100.0 38 ................................... AATTCTTTACAATGACAAAATCGTCACTTTAGATGAAA 43636 35 100.0 36 ................................... TTTTATCTGTTCTTATCCTTATATCGCAATAGCGAT 43565 35 100.0 34 ................................... AATTATGAATCTTTAATGGCAGTAGACCCCTTGT 43496 35 100.0 37 ................................... CTTCAATGAAATCATTGAGTGGTTATTACCAACTGGG 43424 35 100.0 35 ................................... ACCAATGGGGACGTACAGTGAATAAAATCGCCAAT 43354 35 100.0 30 ................................... TTCATCCCTAGTAAAATCAGTACAGCTAAA 43289 35 100.0 35 ................................... TTGAAGAAACAGGCAAGTTGCGAACATGAGTTTCT 43219 35 100.0 35 ................................... AACGATATCCAGAGCGACATACAGCTCAATGGAAT 43149 35 100.0 36 ................................... TAAAAGCATTAGCGACAAAGATTGGAAGTGACAAAT 43078 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 16 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAATAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGCATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 24184-23256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEA01000025.1 Bacteroides fragilis str. 1007-1-F #10 gbf10071F10.contig.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 24183 29 100.0 35 ............................. ATCAAGTGGTCAGCCTTAAATCTGTTGCAAAAGGA 24119 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 24055 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 23991 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 23926 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 23861 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 23798 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 23735 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 23669 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 23604 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 23541 29 100.0 36 ............................. TGTATACATATAGAACATAATAATGCTTGTATCCGC 23476 29 100.0 34 ............................. CTGAGTATTTCGACTTGTATTTCTTTGAATTCCA 23413 29 100.0 34 ............................. TAGCTAATGGAAATTCTACAGACGTGTCTTCTTT 23350 29 100.0 36 ............................. TTCGTCATACTCTGAAACAGAGCGACACCATTTCTT 23285 29 93.1 0 .........................G.C. | A [23261] ========== ====== ====== ====== ============================= ===================================== ================== 15 29 99.1 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //