Array 1 15182-15760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRXS010000031.1 Escherichia coli strain KCJ2K2507 NODE_31_length_55239_cov_10.697706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15182 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 15243 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 15304 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 15366 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 15427 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 15488 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 15549 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 15610 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 15671 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 15732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44023-45515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRXS010000038.1 Escherichia coli strain KCJ2K2507 NODE_38_length_45717_cov_11.756860, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44023 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44084 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44145 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44206 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 44267 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 44328 29 96.6 32 .................A........... CCGGAGATCATCATATTCTGATACGTTCCGGT 44389 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 44450 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 44511 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 44572 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44633 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44694 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44755 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44816 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44877 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 44938 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 44999 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45060 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45121 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45182 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45243 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45304 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45365 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45426 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45487 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //