Array 1 3518667-3519175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059962.1 Pectobacterium brasiliense strain IPO:3710 NAK:380 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3518667 28 100.0 32 ............................ TGGTGCCGCCATGTTTTGAGCGGACCATACCG 3518727 28 100.0 32 ............................ CGACACATCCGCCACACGCCCGTCGGCGCTGC 3518787 28 100.0 32 ............................ ACACGCTGTGCGCGTTGATTGCGCAGCACTGG 3518847 28 100.0 32 ............................ GTAATACTGGGATCGGATTTCGTAAACAAAAT 3518907 28 100.0 32 ............................ CTACCGCGCCCTTGAAACGCTGCGTCGTATTC 3518967 28 100.0 32 ............................ GTTCACCATATTTCCCTGCTAATGAAATCCGT 3519027 28 96.4 32 ................A........... TGAACTAGTAATGGCGACAAAACAGATAGTCT 3519087 28 96.4 33 ...........C................ ATCGATATTAATGTCTACATATTCGCGGAATGA 3519148 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCTCCTCCTCCTTAAAAAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGACTATCAGCTCTGATAAAAAATGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAGGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCACTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3526569-3525519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059962.1 Pectobacterium brasiliense strain IPO:3710 NAK:380 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3526568 28 100.0 32 ............................ CTTGCCTGACGGGTTGCGGCACGCACTCGAAA 3526508 28 100.0 32 ............................ GTCTGCTGCAAACAGACTGGCAAACATACCCG 3526448 28 100.0 32 ............................ AGTCATAATACCCATGCGGAGCAGAGGAATTT 3526388 28 100.0 32 ............................ AGCGCTCGTTCCATCTCATCAATCGCCGGGTC 3526328 28 100.0 32 ............................ ATGAGCATGACATACACCCGCAAATCGGCGAA 3526268 28 100.0 32 ............................ TGAGAAATACTTCACTGAGGTTGAAGGTATGG 3526208 28 100.0 32 ............................ ACGCATATAGTCTTTCTGCGTGAGTGGGAAAA 3526148 28 100.0 32 ............................ GTGAAAAAGTCGGTTTTCGTCTGGCTGATACT 3526088 28 100.0 32 ............................ TACCTGAGGATTGTCAGTCCGAAATCCGGTAT 3526028 28 100.0 32 ............................ AGGAGCAGTGATACCAGTTATCAATGAAGGAT 3525968 28 100.0 33 ............................ AGCCTGGCCAGCATTCAACTTGAAAAAACGGAT 3525907 28 96.4 32 ...........C................ TGGAATAAATACGTCGCCGATGCCAACTTTAC 3525847 28 96.4 32 ...........C................ ACGCCAGGCAACTAGCGCAACTTCCACCTGAT 3525787 28 96.4 32 ...........C................ ATGTTGAGGGCGTGCAACGCGTTGATTTGGAA 3525727 28 96.4 32 ...........C................ TCCTTTTCCTGATCCTTTCGTTCATCGCGTGA 3525667 28 96.4 33 ...........C................ GATATGCCGATGATCCGATTTAAAACGATTAGT 3525606 28 96.4 32 ...........C................ ACAGGCTCTTTCGCCGCCCTGTCATAAGCCGC 3525546 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAAGCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGAGTTTGATACGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGGGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3535515-3536142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059962.1 Pectobacterium brasiliense strain IPO:3710 NAK:380 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3535515 28 96.4 32 .................T.......... CGGCGCTGAAAGCCTATAAAGGACGCCAGAGC 3535575 28 96.4 32 .................T.......... TTGACTGGACGCAGCGAATTAAAGAAGACGGT 3535635 28 96.4 32 .................T.......... CGCCGCGAAATGTCACCAACATAAACCATAAC 3535695 28 100.0 32 ............................ AATGGAAAATTGCTGCGATGTCGGCCATCACC 3535755 28 100.0 32 ............................ TGATTAGAAAACGTCTGTACCATCTGGAAAAA 3535815 28 100.0 31 ............................ TACAGAAAGGCTTCATTAGCCGGCCGCTGTT A [3535840] 3535875 28 92.9 32 .......A...C................ AGCAGTTGTAGAGAGCTGGAGGGTGGTTGCAT 3535935 28 96.4 32 ...........C................ TGCCACCGGACCAGATGAAGGGGACCGACAGT 3535995 28 92.9 32 ........T..C................ CGTGGGGTGCCACTTTGTTTGATGCTCCAGAC 3536055 28 92.9 32 ...............A....T....... AGGGCGCGTGGGTGCGACTGGAAGATAAAGAG 3536115 28 78.6 0 ............GC........C..TGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 94.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAACCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAGGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAACTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAAC # Right flank : CTTGTCGGGATGCGTCGCTGGTGCGACGCATTTTGGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGATTGCCGCCGTGATTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTTAGACTGTTACCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGTCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //