Array 1 225355-226359 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIJ01000022.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N46833 N46833_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 225355 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 225416 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 225477 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 225538 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 225599 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 225660 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 225721 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 225782 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 225843 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 225904 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 225965 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 226026 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 226087 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 226148 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 226209 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 226271 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226332 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242628-244365 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIJ01000022.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N46833 N46833_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242628 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 242689 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 242750 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 242811 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 242872 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 242933 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 242994 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 243055 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 243116 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 243177 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 243238 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 243299 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 243360 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 243421 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 243482 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 243543 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 243604 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 243665 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 243726 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 243787 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 243848 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 243909 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 243970 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 244031 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 244092 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 244153 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 244214 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 244275 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 244336 29 96.6 0 A............................ | A [244362] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //