Array 1 163672-161141 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNC01000029.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015015 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163671 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163610 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163549 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163488 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163427 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163366 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163305 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163244 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163183 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163122 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163061 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 163000 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162939 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162878 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162817 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162756 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162695 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162634 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162573 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162512 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162451 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162390 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162329 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162268 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162207 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 162146 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162085 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162024 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161963 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161902 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161841 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161780 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161719 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161658 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161597 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161536 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161475 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161414 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161353 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161292 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161231 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161170 29 93.1 0 A...........T................ | A [161143] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182282-180179 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNC01000029.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015015 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182281 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182220 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182159 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182098 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 182037 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181976 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181915 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181854 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181793 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181732 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181671 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181610 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181549 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181488 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181427 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181366 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181305 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181244 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181183 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181122 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181061 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181000 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180939 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180878 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180817 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180756 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180694 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180633 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180572 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180511 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180450 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180389 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180328 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180267 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180206 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //