Array 1 268-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJW01000080.1 Acetobacter persici JCM 25330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 267 32 100.0 34 ................................ TGTTAGTCGCCCGGATATCCTCTAGAGCCTGCCC 201 32 100.0 35 ................................ CGCATGAACACCAGTGCCCGCTACAGCACGGCGAC 134 32 100.0 36 ................................ AACGGGATGAGCTGCGGGCCGGTCGCGGCTGTCGAG 66 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 GTCGCCTCCCGTGCGGGGGCGTGGATAGAAAC # Left flank : TACCACCTGCGGCAAACTCTGGTGTTTCTGGACGCATTTGTGCTGAACAAGCCAGAGGTGATGATCGGGCAGGCCATGAGCAAGTTTGACGCAGAAAACCTGCGCCTGACAGACGAGCCAACCCGTGCCTACCTCACACGCCAGATTGCAGCCCTCGGCGCGCTGGCAAGGCAGGTCTCCCCGCATACGCCGGATGCGGGCTAAACTGGCCGCGTCACGCGGTTTCAGAAAAACCCGGAGATAAAGAGCTTTCCTATAACTGAGCGGCATCATCGTTCTGACGGATGATGGCGCAGGGGGAGTTCACCTCTAAAGAGGCGTCTGCGCGAACCTCTATCGGTTGTAAAAAACCGGGGAGGATCGCGGACGGCTTAAATGGTTGTTTTGGAATGAAAAAATTTTCATACTCCGAGATCGGACAGCCAGAAAAGCCGCCTGAATGTCAGGTTCGCGCAAAGCCCCCGATTTTTCTTGTGCGCATCAGGTGATATGCTCACGCC # Right flank : CCCCTACTGGGAATATGTCCATAACACATGCGCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCGTGCGGGGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3080-2314 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJW01000045.1 Acetobacter persici JCM 25330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3079 32 100.0 35 ................................ AGACCATGATTGCCGTGGCCAAGGAGATTGAGGGT 3012 32 100.0 34 ................................ CCGTGTGATGTGGAAGAAAATTGATGGCTGAACA 2946 32 100.0 35 ................................ AGTCAGAGACACCAACTGAATCTCACGCTCTTGCA 2879 32 100.0 34 ................................ CTGAAATTGAAAAGCGCATGATCGAAGGCGAAAG 2813 32 100.0 35 ................................ AAGCTGTTGCGCCCAATGGAAATGTATCAGGATAC 2746 32 100.0 34 ................................ AGATTACGGACATTCTGCCTCAGTCGGATAGCAC 2680 32 100.0 36 ................................ ATGCCGGATAGTGCTGGGGGCATTGGGTGGAGATGA 2612 32 100.0 35 ................................ GCTTTGACGTTTGACCGCTGCATGAAGGTTGTCGC 2545 32 100.0 34 ................................ ATCAACCTGCTGGAGCAGGGGCCGGAGCATATCC 2479 32 100.0 34 ................................ CCGCATCAGGCGGGCAGCTTGTCGCGGGGGCAAA 2413 32 100.0 36 ................................ TCGACGATTACGCCAGCGATGTAGCCAGCGTTGGTT 2345 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.7 35 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : GGGTTGCGCGTGCATGCCTTGATTATGGTCAGCGTGTTCAGCATTCTGTTTTTGAATGTGAGGTCGATCCGGCGCAATGGGCAGAATTGCACGCGCGCCTTCTTGATGAGTCCGATTCTGCAAAAGATAGCCTGCGCTTTTATCAACTTGGTGCTAAAGGGCGTCAACGTGTAGAGCATGTAGGGGCAAAGCCAGTGCTGGACCTTGATGGCCCGCTTGTTTTTTGACGCCTGAACATTTCTGCAAATAGCCAGTGGCAAGCGGTTTCTGAACGATATTTTCAGATAGAATAACCGAGGTTATTTTGCCGATTCAAGCGTCTGCGCGAACCGTGATCGGTTGATGAAATCCGGGGAGGATCGCGCACTCCCTAACGTATTGAAAAACAAAAACAATCTTTCTCGCCTTTGACGTGCTAGTGTTGCGAGGTGACTTCAGTCGACAGGGTTCGCGCAGAGCACATGGTTTTTCCCGTCATAATCAGTTAACAAAACGGCAGC # Right flank : CCTTATGACATAATTACAAATGATGAGACTGGTGAACTCACTGCCCATGAGCAAGCACAGATAGAACTGTACCTCTGCTCGCGCGGTATGCTGAAATAAGGGATTTTTAGATTTCTTTACTCACACCCTGCTTCAACACCCTTGCCGTCGTTTCCACCAAGGCACGGCCACTGGCTTCGTCACGGGCCGGAGCGGGGAAGCGGGGTGCGAGGCGGAATTGGTAGCGCATGGGGAGCGGCGGGCGGCGCAGGAAAGGCCACCCCTGAGAAAGATAAGGGGAACTGGTTTCAATCAGAATGGGCTGCACAGCAGAGCGGGTGCGTTGGGCAATGGCCGCAAAGCCCGGCTGGAGTGGCCCGGTCTCTTCATCCGCTCTGGAGCGTGTTCCTTCGGGAAATAGAATGACCTGACAGCCTTCTTTTAATCTGTCTGTCGCAGGGCCAATCAGTTTGAGTAAGCTGTCATGCCGGATATAGCCTGCGGTGCGGAGCGTGGTGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 52-415 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJW01000027.1 Acetobacter persici JCM 25330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 52 32 100.0 34 ................................ CGTTAGCCGGGACCGTTGCGGTCGGGGCAGCAGG 118 32 96.9 34 ..............A................. ACTGCCGTCCGTCGCATCATCGTGGATCCAAATA 184 32 100.0 35 ................................ CGGAAAGGCCAGCGCGCCAGTTGAAGTCTGAAGCT 251 32 100.0 35 ................................ AGACGCCACCCAATAATGAGCTTCAAAATCAAGCG 318 32 100.0 34 ................................ TCGGCAAGTTTGGCGAGGGCGTCTGATTGGCGGA 384 32 84.4 0 ..........A..............C.A.G.T | ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.9 35 GTCGCCTCCCGTGCGGGGGCGTGGATAGAAAC # Left flank : TGCGGGCGTCGGATAGAACTAAGTCAGAGCTTGTTTGTTTGCAGGACTCATG # Right flank : TAAAAGAGAGCGCGCTTTTTTGCGTCCTCGCGACGTTATCGGGGTGCAGCAGGCTGGGTGCAGGGTGGCATCCAGCCTGAGTGTTTCAGGCAGTTAGTGAGACGCGGGCTGAGGCAGAGGTGTGCCGGTTTCCGGGTCAAGCAGAAGGGGGCTGAGGCGCGGGGGGCTGGTGAAGTCAAACAGATCTGTCAGATCATGCGCGACAGCATCAAAGGAGCCGCTGCCAAGACGCTGGCCCTTCAGCCAGTTATCTTCGATAAAGCGCGGGATCGAGCTTTGCGTGATCTGAACATGGCTCACAGCGTTGGTGCGTGCCCATGGGGAGATCAGAATAAACGGGATGCGGGTGCCCGGTCCGCACCGCCCGTTGACAGGCTTGCCGCCAACCCCGGCAAAGGCTGTGCCCGTGCCACAACGCCCCGGAGCATTCAACTGATCAACTTCCGGATCAAAAGACCCATGCTGAGGCGGGATAAAAGCGTGGTCATACCAGCCGTCTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCGTGCGGGGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //