Array 1 539945-540108 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIH01000009.1 Clostridium botulinum strain ATCC 17843 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 539945 31 100.0 36 ............................... AAGGTTAGCAAGAATATAATAGATAAAGCTATTAAA 540012 31 100.0 35 ............................... TGTAATAATACACTAATACAGTTAAAGTGCAAGAA 540078 31 96.8 0 ..............................C | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 98.9 36 ATTGAACATTAACATGAGATGTATTTAAATT # Left flank : AATGTTTCATAAAGAAATAGATTATGAAAATATTAAAGAGGGAGAATTAGATGAAATTTTAGAGGGGATAAAAAAAGAATTTTATGATCTAATAATATCAGTAAAAGAAGAAAATAAAAATATAATATTAGTTACTAATGAAGTAGGTTATAGCATTGTTCCAGCCTATAAATTAGGTAGGATATTTAGAGATTTTCAAGGTATTATAAATAAATTTATAGCTTCCTTGAGTGATGAGGTTTATTTAGTAACCTGTGGAATACCCTTAAAAATAAAATAAAATTAATTTTAGTAACTAATTAATCTAACTATAAGTAAAAGAATTTTCCAACCGCATTTAATTTTAAAATCTATTCTAGGTATTGAAATATAAGCTTTAAGATAAGTTTTATCTCTACCTTTATAAAAAATGGTAAACGGTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAAGGCTTATATGATATTCTTAAAATTAAGAAATGGCTATTTTACTATG # Right flank : CAGCATGTAAAATAAGGTGATTCAAAATAAATTAAATCTATTTTGAATCACCTTATTTTTGTGTAACAAATACAAGCTATTTTAGATAATATTTTAAAAAAGCATATAATTATTATTTTATATTGTCACAATAAACATTAATAGCATCTCTTAAAAATTTAGAAAGACCAGTTTTATATTTATCTATATTAGCAGTAAATCTTTCATCATTAACATAAATTTCTCCAAGACCTCTAAATATTTCAGGAGTACAATCATAAAAGTTTTTTGAAATATGCTCTCTAGATTGGTGTATATATTCTTGAACTTCTTTATCATCTGGATTTTTGTCCATAAGATTTGCTAGTTTTTTATAAATAATATCCCAATCTTTCATTATATTACTCCAATCTTCCTTTGTATATTTAGATGTTTTTTCATTACTTTCTTTATAAGCAGAGGTGTTTCCATATTTTTCTTTTACCTCTTCTGAATATTTTCTTTGATGCTCCTCTATTTCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 971890-972117 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIH01000009.1 Clostridium botulinum strain ATCC 17843 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 971890 30 100.0 35 .............................. GTAATGTAACTGTTCCAGGGAAGAAGAAATTAGAA 971955 30 100.0 34 .............................. TATATCCTCTAGGTAGTGTGTCACCAGTTTTTAT 972019 30 100.0 37 .............................. AATATAACTTTAATAGTATGATAATCTGGAACTATTT 972086 30 90.0 0 ........A......T.............A | TA [972110] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 97.5 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATGCTGAAAATATGGCTAATGCTATTGTTAAAGGACTAGTAGGGGAAACTACAAGCAATATCACACTAAGTCAAGCATCTACAAATAATAATAGTTGGATTAATTTAGATGGTAAAACAGGCACTATAAATACACTAAGTGGTGTAAATATTAGGGAAAAGAAATCTACATCTAGTAGAATATTAGGTGCTTTAAGTACAATTATATAGAAAAGAAGGAGATTGGATACACATTTATTATCCTCCACATGGTGGATATGTTTATGCTAAATATATAAGATATTAAATTTTTGAAGGTATTTCTATAATGTGAGTAACTTTTATTTTTCCAACCTACTTTAATTTTAAAATCTATCTTAACCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATCATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATGCTTTTATGATATCTTTAAAATTAAAGAATGGCTATTTTACTATG # Right flank : AATAATAATTGTAGCTTACGCTGTAGTTATTATTTTTTTATTATTCAAAGGAATTTTCTAACATTTATAGAATATTAAATATAACGGCTTACCAATAATTTAGGCAACCTCCTTGCTTAAAAAAAAGAATCCCAATAAAAAGGGGTTCTTTTTGAATGGAATTTTCTATATATCTATATATTGGTGCTATGTTTTGGTCTATTCTTATTATATCCAGATGTAGAAAAATTAATCAATCAGAAATATATAATATGTAAATTTTTAAAGGTACTTCTGTAATGGAAGTACCCTCTTTTTTTATTGGAAAAATTATCATAATTTATATAAATTTATCATGAAAGCTATTGATTTATTATACTACACGTAGTATAATTGTAATTGTAAGGAGGTGAGAAAAAAGGTGGTCAAATTAATAAGAAAATTAAAAAAGCTTGATAAACTACTGGGAATAGTCATCAAGCTACTGGTAAAAATAACAATCATAATAATGCCGCTTAAAC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1846313-1846471 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIH01000009.1 Clostridium botulinum strain ATCC 17843 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1846313 29 100.0 35 ............................. TAATTTTATCATAGAAAATGTAATTCTATTTGAAT 1846377 29 100.0 37 ............................. ACAATAGAGGGGCTAAGTTCCTGGTGTGAAGCAAAAT 1846443 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 98.9 36 TTAAATACATCTTATGTTACTGTTCAACA # Left flank : TTATTATACCTGTAAATATAAAGTTTTTCTTCTTCCTAGTTAGTTCTTTTAAGTCTTTTTTGTTCTTTAAAAAATAACCTCCCACTGCAATTGCTGAAAAAATAGTTGCCCATCCCGTAAATCTAGGGAAACTTCCCATTAACACCATATACATTATCACTAATAAGGCTATATGGGATTTTTTCATATTACGAAATTTATCCACAATACTCCCTCCATATTTTTATAATATATTTCCTACACAAATATTCTTCTACAAGGTTATGGATAATCCTTCAAAAATATAAAATAATATACAATATTTACATAACTACAAAAAACTATTTTATCTATTCCCTTTAAATACTAAAAACCTGTCCTAAAAATAGACAGGTTTTTAAAATTGATCTAATAATTTACATATAAATTATCACAATGTGTAGTTTAGTTTTATAAAAATCCCTATGCCATTCTCTAAGAAGTAAGCGACTCACACCAACTCGTAGATTTGGGCTCTCTGC # Right flank : CATAGTAAAATAGCCATTCCTTAATTTTAAGAATAGCATATAGCCTTTGATTTTACAAGGTTTTAAAGAAAGTTTTCCAAGTGATTTTACTTTTTTATAAATATAAAACAAAAACCTATCCTAAGCCTTATATATCAATGGCTAGAATAAGTTTGTAAATTTGTTACGCCTGGAAAAATTCAATTATATATAAGCTATATACTATACTCATTAATGAAACTACTTCTCCCATTCTCGAAGTAGTAAGCGACTCACACCAAATCTGAGATTTGGGTTCCCTGCTTAAATACTATATTATTGATATGAAATGAAGCATTCCTCCAGATAATAATGCTACTACAGCACCTATTATAGTTCCAATACCAGCCCCTTTTACATGATGCCATGGATTTCTATATTCTTTATCCATATCCTCTGTACCAGGTATTCTAGTTTTTTTACTGTGACAAAAAAGACCTATATCTAGAACAATCATATCATAAATGTTTACTACAAAAAAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAATACATCTTATGTTACTGTTCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 1853340-1852846 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIH01000009.1 Clostridium botulinum strain ATCC 17843 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1853339 30 100.0 36 .............................. TATACTATAAGTTTTAACCATAATGTTAATTTCCCT 1853273 30 100.0 36 .............................. TTGTGTTTTATCAAACATTGGTGATACCTAAAGTTA 1853207 30 100.0 35 .............................. AAACTATCTACTTATCTTTTTTTAAAATTAATTAA 1853142 30 100.0 36 .............................. TAGAGAATGAAGCTAACTGATATGGCGGTAGTAGCT 1853076 30 100.0 35 .............................. AAGGTTAAAATTCTAGGTTCTTTAAAAGCGTGGTC 1853011 30 100.0 34 .............................. TATATTGGACAACAATAGTGAGGAGCCAGTATTA 1852947 30 100.0 43 .............................. GTTAAATTTGTTTGCCGTTCTCCATCTATAAGTATTATTGAAC 1852874 29 80.0 0 A..-...........AG...........GC | ========== ====== ====== ====== ============================== =========================================== ================== 8 30 97.5 37 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TAAAGGTTTTGTTTTAAATACAAATGGACAAGAATCAATCATTAATGCTGATAGTGCCGTTGTGGCTATTGGATATTCATCTGAAAAAGACTTATATAATGAGGTTAGATTTGATATTCCAAATGCAAGACTAATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAACCTTTAAATAAACTTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTTGTTCTTTACTGAAATTCTATAAGTATATGAGTGTTTTGTTATGTACTACTTGTGTATATTTAAAGTTTTCCAAGTGAACTCAAATTCAAAATCTATTCTAAGCATTGATATATAAGGATTAGAATGGGTTTTTATTATGTATTTCTAAAAAAGCAAAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AGAGAACCCAGCTCTGTAATTTAGTGTGAATCTCGTACTTCTTGGAGCAAGAGAGTAGATTTTTATTGACTAAAATATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGAGCTATATAAATTGTTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTTTTTTAAGTTCTCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCATTTGGTATAAGATATAATAATACCACCGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTATTATAATTTTCTTCCTCTAGATTTTCATTTGTTTTATAGTTAACGATTATTTCATATGGCTCTTTAGTAGTTTGTAGGGTAAATCCAGCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 1864744-1864582 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIH01000009.1 Clostridium botulinum strain ATCC 17843 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1864743 30 100.0 36 .............................. AATGATATATAATGGCAAAAGAATACGAGGTATTCC 1864677 30 100.0 36 .............................. TGTTCATATGTACCTTTAGAATATTCGACCCAATCT 1864611 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CATAGGCTGATCCAATAGTTAAAAAAAGTTCTGCAGTTATATCAGAATGAGTAAGGGTATAGCGTCTTCCTAAAATAGGCTCCGTTGAGGTTACACCATTTCTAAATTCAACTGAAAGTTTATCAGTATTCAATTTGTTCATTTAATCCCTCCCCATACAATACGTTTTATACAATATTATATGATAGGATTTATGAATTTAGTATATTTATATATAAATCAATTTTAATTATAATATTTAACTTAAATCTTGTATCAGATCTTGTACTACCAATAATATATCAGCTAATAGTACAAATAAAATATTTTCATATTAATTGAATTTTTCCAGGCATAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGGTTCTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTCTACGAAGCCTTGTAAGATCAATGGGTTTATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTGTACATAATCTGAAATTAAAGCGAAGTAACCCTTGAAAATAAAAGTACTAACAATGTTCTTTGAAGACTGAATAATACGGTGTTAGGAAGTAAAAATTTTTTATAACAAAATATATCTTTACAAATGTAGTAAGGTGGCTTACTATATAAATGAGGAGGTTTCATTATGGAAAGTTTTAAATTTAGTCTTAGGGATATACCAAAACGAGAGATTTTAAATGAATATTCTAGCCGATTTCCGGGTATAAATGTAGATGCAGTCGAAAGCTGTATAGCACTCCTCAGGACGGCTTCTGATATTTCAAAAATACTTGATGAACACTTTTCTAAGTATGGCATTTCGGAAGGAAAATTTACAATTTTGATGCTGTTATATCGACAGAGTGATTATCAATTATCTCCAATATCTCTTAGCAAAAAAGCTGAAGTTACTAAGGGAACTATGACAGGATTAATAGCTGGCCTTGAAAACCAAGGTTTCATAGAGAAAATCTCCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //