Array 1 21411-21078 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJM01000008.1 Cronobacter turicensis strain cro3064B1 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21410 29 100.0 32 ............................. CAGCAGTTTGAATCTGAGGGGCTTAAGACGTT 21349 29 100.0 32 ............................. CGGAGTAAAGGCATCCCCATCGTCGGCGTTGG 21288 29 100.0 32 ............................. TGCGCAGCTTCAGCCTTGTGGGTATTAATACG 21227 29 100.0 32 ............................. GGATGGGGCCAAATGGTCTTAAAAGAAGTGGT 21166 29 93.1 30 ...........T.A............... TATGACATGCGGGCTCTTAATGATGCAAAT 21107 29 89.7 0 .......T...............C....T | C [21104] ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATTGCGTTTATCGTCGTTAACATCAATATCAACTATCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACCGTCACAAGTCAGGTGAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGATCATCACGCTGGAGCCCGAAGGCGAGGTAGTCGCCGATGCGCTCATCACCTTTGTGTGCATCGATCTGAAAACCCAGAAAGCGCTGCCGATTGACGGCGAGCTACGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGCGTGTGCCCGCCATCGTGGATTTATCGCCGCTGAAGATAAACAATCCGGTAGATGTTAACGGCCCACAAGCGTTGCTGAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTTACAAGATGGATTGTTGTAAAAATGTTGGTAGGATGTGGAGGGAGAAAAAATGCTAATCAGCACAAAGGGTTACCGTTAGT # Right flank : TATAAATACGACCTGGAAAAATAATAACCGCGTAGCATGTTCATTTAATAAACGGACAATAAAAAGCCCGCTATCGCGGGCCTTCACTTTTAATAGTATCCACCGCCGCCCGGACGGGAGTCAGATGATCTCCCACCACAACGCGTGCCGTCAGCAGCCCTGTCGTCGTCGTGATTGCAGGCAGCGTATGATTGCGTAGCAGAGCCGAAAGAAAGCAAGACGAAGAGAAACGCGAATACCTTTTTCATTTTTTATTCCATAAAGTGCCATCACATAATGGCCGTCTCATTGTATGAGGCGGATTATTAAATTCGATGGGGAAGGTCACAATGCAGACGGAGATAAAAAAATAAGATTTCGCCATGTTCTGGAATGCACCTCCCACAAATAATCTTAAGCCTGGCTATTACTCCAGCCCCATCTCCTGTCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTCAATTTTCAAGACTGCGCAACAAAGGAGAGGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6177-6937 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJM01000089.1 Cronobacter turicensis strain cro3064B1 contig89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6177 29 100.0 32 ............................. CGGATTGTGAAACAAGGTTATCCACTTGTTCG 6238 29 100.0 32 ............................. CCACCGAGCACCAGCGGAGTGGCGGTTAACTC 6299 29 100.0 32 ............................. CGGATATACGAGGAGGGGCTGTAAACGTGTCG 6360 29 100.0 32 ............................. TCGGATACGTGGGATGCGGAAAAACCGCTTGT 6421 29 100.0 32 ............................. ATTAACCAGTTTCAGCACCGACTTTGACCTGA 6482 29 100.0 32 ............................. GGTGATACCGGCGCTACGGGTCCACAGGGGGT 6543 29 100.0 32 ............................. CCCTCACGCCGCGTGGAACCTTGTCCCATTCT 6604 29 100.0 32 ............................. GTTGCTTTACCACCAAAGATTGCGCCCACACC 6665 29 100.0 32 ............................. CAGGGCGTGACCGGGCTATACAACGGCGCGTC 6726 29 100.0 32 ............................. GGTCATGAGGTGCTCGCAAAATGACAACCCCA 6787 29 100.0 32 ............................. ATATTCCTTTTTAATGAGGAGATTAAATGAAT 6848 29 93.1 32 ............CC............... GTGATACCAGCTCTTTGTCTTCCAGTTGCCAG 6909 29 86.2 0 ....A.......CC..............T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCAGGTGAAATCGAACCGCCGCAGCCTGCGGCAGACATGCTGCCGCCAGCGATTCCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTGGTCGTGACGGAAAGCGTCCCGTCCAGGCTTCGCGGGCGACTCGCCATCTGGCTGCTAGAGCTGCGCGCCGGGGTTTACGTGGGGGACGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGACGGATTCCGGTGGATCTAGACGGCCTGCGGCTTGTTTCGTTTTTACCGTTGGAAAATCAGTAGGTTAATGGTTCTTTAATAATATGAGATTGTAAACCAAACGTTGGTAGGATGTTGAGTGCCAAAAAAGTGTAATAAATACAGTGGTGTAGTTTTAGA # Right flank : TCATCCGTTGAGGCTTCTTTCTGCGCCACCAGCGTGTTCCCTGCTGCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCTTCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGCTCCCCATGTCCGGTTAGTGCGCTTCGCTTACCCACCCTAAAGGCGTAGAGCCTCATGCCCGGCGGGTGCGCTTCACTTACCCACCTTACAGGCGTAGATCCTCATGCCCGGTGGGTGCGCTTCGCTTAACCACCCTACAGGCGTAGATCTTCATGCGCGGCGGGTGCACCCTACAGACAGACGCACATTTCATACCCTACGGGCGCGCACTCTCATGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //