Array 1 3487958-3486098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057483.1 Citrobacter sp. RHB25-C09 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3487957 29 100.0 32 ............................. TATTGCGGGGTTTTCTCTTTGTCTAACCCGAT 3487896 29 100.0 32 ............................. GCTGTCGCTGCTGCGTGCTACATCATGGCAGA 3487835 29 100.0 32 ............................. GCCTCATGGTAAATTTATTGGCGTCCCGGTGT 3487774 29 100.0 32 ............................. TAGTTGGTTGTGCTCAGGTTTCCGGTGATGCG 3487713 29 100.0 32 ............................. CCGTGAAAGAGGCGCAGAGCGCGATAATCAAA 3487652 29 100.0 32 ............................. TTGATGGTGACACATCAGACAGCATCATTGAA 3487591 29 100.0 32 ............................. TCAGAGAAGCTTGTTGCTGCAGACAGGTCAAT 3487530 29 100.0 32 ............................. TCTGGATTAATTGCTTCCATCTCAACGAGAAA 3487469 29 100.0 32 ............................. TCTTTTATCGGCTCATATCATGCATTGCCGGG 3487408 29 100.0 32 ............................. CGGTATAAAGAGCACTGATTAATTTCAGAGGT 3487347 29 100.0 33 ............................. TGATCCGGTCGCAGTAGGAACGAACAACTGAAC 3487285 29 100.0 32 ............................. GCTAACGTTCGCACAAGACTACGCCGCGCCGC 3487224 29 100.0 32 ............................. TCCCTCTCCTGTCTCCCAGCGTGAGCCTCGTA 3487163 29 100.0 32 ............................. CGTTCATGGTTGCCTCAGTAGCGGATTTTCGC 3487102 29 100.0 32 ............................. ATCACCGTTAATGGTGATAGCATGGATGGAAC 3487041 29 100.0 32 ............................. TCAAAACGGCCAGCAGGGTCATACGTGTTGAT 3486980 29 100.0 32 ............................. GATCTGGTAACTCAATAACAATATCGCTGAAG 3486919 29 100.0 32 ............................. CCGTCACCCGACGCAATTGTTGATATTCGTGA 3486858 29 100.0 32 ............................. CATTACTGGAGGGTTTTCTCAGAACACATCGA 3486797 29 100.0 32 ............................. CTGTTGCCGATCGCTTTGTAGCGTGGCCCGTC 3486736 29 96.6 32 .....................G....... CGTCACTGTTTATGATGACAACGGAGTTTTGT 3486675 29 100.0 32 ............................. TATTCACATAATCCCACGTCGTCTCACCATTA 3486614 29 100.0 32 ............................. GTATTTCAGCCAGCGCTGGCGATGGTCAAAAA 3486553 29 100.0 32 ............................. TATGACCTGCTGGCGCCAATCGCTGATAACGC 3486492 29 100.0 32 ............................. GACACGCTGGACGTGCAGCGCGACAGCAATGA 3486431 29 100.0 32 ............................. TTGACGCACATCTAACAGATTCCGAACTGGAT 3486370 29 100.0 32 ............................. CTGCCCGATCAGGCATTTACCAACGCGCTAAA 3486309 29 100.0 32 ............................. GTGTGGCCATTGGAAATAAGGCGATCTCATAT 3486248 29 100.0 32 ............................. GCGACCACGAGGCCGCCCAGTACGCTGAACAG 3486187 29 96.6 32 .......T..................... ACGTTGACGTTATCGAGATCAGTAGCTGGGAG 3486126 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCTCAGCGGGCGAAATAGAACCACCTCAACCGGCTGAAGATATGTTGCCTCCGGCGATCCCTGAACCAGAAACGCTAGGTGACAGCGGCCACCGAGGGCGTAGCGGATGAGTATGGTTGTTGTCGTCACGGAGAATGTGCCCCTACGTCTTCGCGGTCGACTCGCTATCTGGTTACTTGAGATCCGGGCTGGGGTTTATGTCGGCGACATTTCGAAACGCATTCGGGAAATGATATGGCAACAAATCATACAGCTTGGCGGCGAAGGAAATGTCGTGATGGCCTGGGCGACAAATACGGAGTCTGGATTTGAATTTCAGACGTGGGGAGAAAACCGCCGAATACCGGTAGATTTGGATGGACTCCGTTTAGTTTCCTTTCTTCCTATTCAAAATCAATAAATTACACGCTCTTTAACATTGTGAGAATGTTGTTTTATAGTTGGTAGATTGTTGATACTAAATAAATTATTTATAATTCAGTTATATATGCTTAGT # Right flank : TTTGCTGCAGTTGCTCTTTTAACCGGTATTAAATGTCTCCGCGCAGTCGAGATAAGCCGCACTTAACCTTTCTGAGAACGGGTTTTTATTCCCTTTTCAGCAGCCGTCACGAAAGTTGAAATGAAAAATCCGAAAGAAAAAGGATGAGCTGTTTTATAGGCGACTTTGTTTTACCCTTGGTGGCGTTATTGCCGGAGGCAGTAACGTCTTTTAAAACTGAGGGAATATACAGATGAAAAAAATTATCTTCGCTGCTGCACTGACTCTGGTGTCTGGTTCTTCTTTTGCAGCAATTACTGAGACTTGTCAGAAATATTTTGATGATGTTGATGCTCTAATTGTCCAGGCTTCGAAAACAAGCGATCAGGCCAAACAACAGATGGAAGCATTGAAGCCGCAGTTGGAGCAGGCTAAGAAGCAGCTTGCAGAGTTACCGGCAGAGAATCAGGATGCAGGTTGCAAGCAGGGTTCTGACGCTCTGGTGCAAATGAAACAATCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //