Array 1 2202-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYZ01000157.1 Leptolyngbya valderiana BDU 20041 contig00157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2201 37 100.0 38 ..................................... CGATGTCTCCGTACTCCGGCAGGATTTCGCCTTCGATT 2126 37 100.0 35 ..................................... GCGGTGGAGATCGCTTCTTGCGACGCACGACCAAA 2054 37 100.0 35 ..................................... GAGTCGTTTCGTGAGAAAGAAAAGGACATGGACGC 1982 37 100.0 42 ..................................... CGGCAACTGTGCGATCGCCCCAGATACGGCAAATAGAGCCGA 1903 37 100.0 42 ..................................... CTTTCTCTCGCGATCGCACCAACCCCACCGAAAGGATAACGA 1824 37 100.0 40 ..................................... CTCTCCTTCTAGGTGTCAATCCTGGCTCTTTAGGGCTAGA 1747 37 100.0 35 ..................................... GATCGCCCCGTATTTCCCGACAGCGCCACTACCTG 1675 37 100.0 39 ..................................... ATTGTCGATTCCCTCAGCCATCTCTGGTTTTGGGAACTC 1599 37 100.0 35 ..................................... CTCTTGTTTTCGCAACAAAGACCCTCAAACTAAGT 1527 37 100.0 35 ..................................... TGGGGTTGTAACTCCAACACCAGTTATCGATCCAG 1455 37 100.0 44 ..................................... GTTTCGAGAAAATTGAATTATGTATGTTGCTGAAACTCAAGCCA 1374 37 100.0 35 ..................................... ATTCGCAAGATACGCTTTTACGCGGTTGATGATGG 1302 37 100.0 32 ..................................... GATCCAAGCGGCGATCCAGTGGCAGAGGCACA 1233 37 100.0 34 ..................................... GGCCGCCGCCAACTCCGACGAACCGGGCGACACC 1162 37 100.0 36 ..................................... GTAAACGTCCCAGTTCAGCCAGTAACCGTTCTTCCA 1089 37 100.0 33 ..................................... GGCGGTCGGTGCGGCGGTATCCCAAATCGCCTA 1019 37 100.0 41 ..................................... CGAGGTCAGTTACAGTGCGGACAAGTTCACCGTTCTCGAAA 941 37 100.0 33 ..................................... TGAGCCAACGTTTTGGTAAAACGCCATACTATC 871 37 100.0 36 ..................................... CCACCACTGCCACCAGAAACAGGAACCCAGCTTCCA 798 37 100.0 36 ..................................... ATTGGTACTCCAGAGAAAAATAAAACTTCAGATTTT 725 37 100.0 35 ..................................... GGGCATCCTGTTCTTGCCCTTGGAAATGTGTCAGA 653 37 100.0 36 ..................................... GTAGAGAGTAGTCAGTGATGCTTTCGGTAACGCATT 580 37 100.0 34 ..................................... GCTGCATTCCTCGATCGAGACTTGCCTGTTTTTC 509 37 100.0 34 ..................................... TTCGCTGTAACGGAGGTTCTAGCGGCTGTGCTTG 438 37 100.0 35 ..................................... AAGCAGTTTGGCGGCTTGTCCGGGGGACAGCTTTG 366 37 100.0 34 ..................................... GAGTTTCGAGAGATCGACGCGATCGATCTTCTCT 295 37 100.0 34 ..................................... CGGACGAACTCGCCAAAACCTGCGAAACCCTTCT 224 37 100.0 35 ..................................... CAATCCTGGCTCGTCCACATTTTGCTCTGCCTAAA 152 37 100.0 41 ..................................... GCGTTCAGCGCATCGCATAGCGAGATCGCCGCCGTTCTCGC 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 30 37 100.0 36 GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Left flank : CGCTAGGGGTAACAGGCGATCGGCCGTAGCTTGCAGAAGGCTGTTTCCGCTTCCGTCGAGGCAGAGGAACTGTTTGGGGCGTCGAATACGACTGAGGGGCCAGAAGCGTTCCCCCTTTCCCCCCGCGAGGATGACGGGAATAAAGACCATAGTGAACCTCGATGTGTTTCTGATAATGTTGTTTGCGTTGCCCCCATTTTGGCATCGCCCCGCCCGAGATACCGTAAGGAGGAGTGAGAAGAGCGTTTTTGCGCGAATGGGTAGGTGTTTGAGAGGAGGATGTGCGGTTAGAGAGGTGAAAGGCTTACAGCGTCTAGGTTTGAGCTTCTGAAGAGTCGGAGGCGATCCGCGCAATCTTTGAAAGCCTTATCTGGTATGTGTTTGAGAGATTTAGGAAGAAGTGCAATATGGCATTTTTGTCGAGTTTCATGGTAGGATGGCAGCGATCCGCGCAACTGAACCTTGAAAACCAAATAGAATCAAGGTTTCAGAGGCAGGCC # Right flank : CATTGAAGGCCGCGCGCCGATTTGGATTTATCTTGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACCCAAAAATCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 24133-24456 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYZ01000058.1 Leptolyngbya valderiana BDU 20041 contig00058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 24133 37 100.0 35 ..................................... AACTTTAGTATGATATGATTCAGGACAAAGACCAA 24205 37 100.0 35 ..................................... TCATCTCCGAACGCTTCCAGAACGTCCCTGACCTC 24277 37 100.0 34 ..................................... AGCGATCGCCTTCCAAGGGTGGGAGCGAGAATTT 24348 37 100.0 35 ..................................... ATTCCTGCAACGAGAGACACCCCGCCAAAAATATA 24420 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 100.0 35 GTTGAAATTCACCAAAATCCCTTTGAGGGATTGAAAC # Left flank : AGCGCCGCACGAAGATTCATAAGGTGTTGAAGTCTTATGGGGAGTGGATGCAGTACAGCGTGTTCGAGTGCGATTTGACGGATACGGAGTACGCCCGTTTGCGGCGGCGGTTGCAGAAATTGATTCAACCGGAAACTGACAATATTCTGTTTTATTTTTTGCGCGGGAAGCATCATGGAACCGTCGAACGGATTGGCTGTCCGCCTCCGAGGGATACGACAGTGTTTTTCTGTTGAGTTTTGTAACGATTTGCGCGATAGGGAGGGTGTTTGAGGGAGACGGTGGGAAAAACAGGCTGTATGGCTGATGGAGCGAGGGTTTGGAGCGCTGGCGGCAAAGGGACGATTCGCGCAAACGCTGTAAGGCTTATGGAGCAGAGGTTTTCGGGATTGGCAGACGCAAGGAGAGTTGTGTTTTCAGCGCGATCGATGCTATTGTTAGGGGGATCCGCGCAACTGAACCTTGAAAACTGCATAGTATCTAGGTTCTACGGTAGGGCC # Right flank : GATCGAGAG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCACCAAAATCCCTTTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //