Array 1 5434-6864 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVV01000027.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1216b NODE_27_length_57646_cov_27.8314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5434 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 5495 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 5556 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 5617 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5678 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5739 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5800 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5861 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5922 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5983 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 6044 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 6105 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 6166 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 6227 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 6288 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 6349 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 6410 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6471 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6532 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6593 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6654 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6715 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6776 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6837 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23627-25791 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVV01000027.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1216b NODE_27_length_57646_cov_27.8314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23627 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 23688 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 23749 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 23810 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 23871 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 23932 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 23993 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 24054 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 24115 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 24176 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 24237 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 24298 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 24359 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 24420 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 24481 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 24542 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 24603 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 24664 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 24725 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 24786 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 24847 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 24908 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 24969 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 25030 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 25091 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 25152 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 25213 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 25274 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 25335 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 25396 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 25457 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 25518 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 25579 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 25640 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 25701 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 25762 29 96.6 0 ............T................ | A [25789] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //