Array 1 1107437-1109052 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037893.1 Salmonella enterica subsp. enterica serovar Montevideo str. 42N chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1107437 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 1107498 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 1107559 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 1107620 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 1107681 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 1107742 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 1107803 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 1107864 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 1107925 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 1107986 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 1108047 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 1108108 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 1108169 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 1108230 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 1108292 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 1108353 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 1108414 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 1108476 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 1108537 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 1108598 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 1108659 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 1108720 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 1108781 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 1108842 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 1108903 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 1108964 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 1109025 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1125188-1125827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037893.1 Salmonella enterica subsp. enterica serovar Montevideo str. 42N chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1125188 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 1125249 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 1125310 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 1125371 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 1125432 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 1125493 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1125554 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 1125615 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 1125676 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 1125737 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 1125798 29 93.1 0 A...........T................ | A [1125824] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //