Array 1 9992-8609 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMX01000028.1 Acidaminococcus sp. AM05-11 AM05-11.Scaf28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================== ================== 9991 34 100.0 38 .................................. ACGTAATAGGTGGTGATATGTTATACAGGCCCATCTAT 9919 34 100.0 40 .................................. ACAATGGGGACTCAATCATTTGACCGTTGCCCTGCCCTGC 9845 34 100.0 43 .................................. ACCCTACACCGGGCGGCGATGGGTAAAACCACTTCTGTTCATT 9768 34 100.0 40 .................................. ACTGGGAATTATCAAGTGTTGTACGCAAGAGACGGACAAA 9694 34 100.0 43 .................................. ACCAATGTCCTGTGCTACTATATCAGTGTAGCGGGGACATGAG 9617 34 100.0 46 .................................. ACCTATCGGTGTTGGTCAACAGTTTGGTGTTGATCCTCACAACATG 9537 34 100.0 40 .................................. ACACTTTTCAGCCTGTAGTCTTGACTGTGTAGGCTATTTC 9463 34 100.0 39 .................................. AGCTGACCTACAACATCGATAAGAGGTAAATGTAATTGA 9390 34 100.0 41 .................................. AATTTTTTCACTCCTTTTTCCATTCGTTCGTCGTCCACTTT 9315 34 100.0 45 .................................. ATTATTGTCAACACTTTTTTTTGATACCTGCTGATGTTGACCATA 9236 34 100.0 42 .................................. ATGCCAGGACCTTCAGCCACAAGGGTACTTTCTTTCTTGTCA 9160 34 100.0 41 .................................. ACTTGGTGGCTCTCTGGCTGTTGACTGCGCCAAAGGATTAC 9085 34 100.0 39 .................................. ACCAGATTTTTCATGATTTTTTTTCCTCCCTTTTGTGAA C [9070] 9011 34 100.0 37 .................................. ACCATCGGAGAATAACCGCTTTTGCTCTTCTGTATGA 8940 34 100.0 41 .................................. TCATAGCGGAAGGTGTGCCCGCACAACCATACTGTTTTAAC 8865 34 100.0 38 .................................. TGGTATACCTTGGGCGGCAATAACATAGCTTGCCCCGG 8793 34 100.0 43 .................................. TCGTCATTGTCCCACTTGTGCTTTTGGGACACGCTGGCGGTCT 8716 34 100.0 40 .................................. CTTAAAAGCAACTGCGTATTGGCATACGATGTAATTCTGG 8642 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================== ================== 19 34 100.0 41 ATTTTCTAAATGATTCCCCGAAAGGGGACGGAAA # Left flank : GAGAGAAAAAGAATGTATCGTCCTGATTATCTATGACATCGTAGATAACAAGAAACGGAATAAAATGGTAAAGTGTCTGGAACGGTACGGCGTGAGAGTGCAGAAATCTGCTTTTGAGGCACTTTTAGGACGCAAAAAGTATGATCGATTAATTGATGAAAGCCATCGTATAATCGACCCTGCAACAGATTCCTTGCGTATCTATATTCTTGATTCTATTGTGAATGTCTACACCTGGGGACTGGGCGAACGGAAAGAAGAAGACTGCGTGATTTTGTAAGCTAAGAGAATAAGCAAAATTCTCTTTACGGACGACAGTAAGTCCTGTTATACTAAAAAGCAGTTGTTCTGCACTTGATAGTAAAACAGCGCCGGACCGCATGGGGTCTGGCTTTGCAGGTATTTTACCGCTGCTATGTGCACCCATTTCCTCCAATTTTACCAACAGCGCCGTTTTTCCCTGTTTTCAGCCAGGCAGAAAGCGGCTTCCAGGGGCTAGG # Right flank : TTTTTGCTATATGAGCTTCCTATAGCAAAGACAATTTTTTTAGCTTTTTCCCTTGGAGGCGTCACGATGACCAGTGAGCTAAAGGTTTTACAGCAGCAGTTCCCCCGGGTGCAGGCCTGCTGGGCTGCTATTGTTCTCTACGGGCAGCATTCTGCTACCTACAAATTTGCTTTGGCGCGGTGTCTGCTGGAGCTGGCGCAGCGGGGGCAGAAACGGGTCTCGCTGGAAGAGTTGGCGGTGCCCTATGCCTGGTACTTGTGTATCCACACGGCCAGGGCGCCTCGGCAGTTCACCAGTCGTTCCAGTACGGTGTTTCGCAGCTGTGAGGAGTTCAATGCGGGCAAAATCAACCAGGAGGCGCTGCTGCAGGTGGTGGTGCAGTACGGGTTCAACAATGTTCTTGACGCTTTCCACATTGTAAACGGGGAAGCGGTGCCGGTGCGGTTTTTTGAAAAGCGGTTTGTGGGCAGCAGCAAGGGTATTGTGCTGACGGAGGCTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTAAATGATTCCCCGAAAGGGGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 21458-20009 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMX01000028.1 Acidaminococcus sp. AM05-11 AM05-11.Scaf28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 21457 35 100.0 42 ................................... GGAAACTTCGCGAAGAAGCTTTGCTCTTTTTTCGTCTAATTT 21380 35 100.0 41 ................................... TGTTTCACTGCAAACATTACGTACACCTTTAATTTGTTTTT 21304 35 100.0 37 ................................... ATTGTGTATCAAGCTTTTGTGTTGACTTAATCATAAA 21232 35 100.0 44 ................................... ACGATTACATGGCAGAAGATGAGCTGGAAAAAGTAGAAAACCAG 21153 35 100.0 36 ................................... TTTTTCTTCTTGTTCTTCATTCATGTACTCGTTTAA 21082 35 100.0 40 ................................... ATCCGGAAAATGACTTTCCCAACGCACCCATAAAGATGTG 21007 35 100.0 41 ................................... TCATTTACGATCCTTCTCAAAAAAATTCATTCGGCTTTTTT 20931 35 100.0 40 ................................... ACAACCATTTTCCGTTGCTTTTCATTTTTTTTTACTTCCA 20856 35 100.0 39 ................................... AATCTTGTAACCCACCGTGATGTCCATACCCGTGGTTCT 20782 35 100.0 42 ................................... ATCCGCTGGAATACCGCGTGTTTCAGTGTTTTCCATCCATTC 20705 35 100.0 42 ................................... ATGGCATCCACGTATTTGAGATTTCGGACATTACTCTTAACA 20628 35 100.0 41 ................................... CTTGAAGATACCAGAGGGAAACAATGGGTAAGAAAGTCCCT 20552 35 100.0 43 ................................... CAGTGTAGCGATGACATGCGGTCACGGACCTGAGCCAAAAAAA 20474 35 100.0 39 ................................... TTGTTTGTCAACACTTTTTTTTTTGGTGGCGCTCTATCT 20400 35 100.0 39 ................................... ATGGTGGATATTACCCACCGTCAACGCATTCACCAATTC 20326 35 100.0 36 ................................... ATCAGTTGCTCCTTATCGGTATGTCTCCAACCCCCG 20255 35 100.0 34 ................................... ATGGTCTACTAGCTTATCGACATTTATCGTGTTG 20186 35 100.0 36 ................................... CCGCCCTTGAAATGCCTTGAGTGCGGCCATTTATCC 20115 35 100.0 37 ................................... TCTACCACCACATAGGTGGCTTCCTTGAAAGGCTGAG 20043 35 88.6 0 ....................A...........CCA | ========== ====== ====== ====== =================================== ============================================ ================== 20 35 99.4 39 ATTTACTAAATGATTCCCCGTAAGGGGACGGAAAC # Left flank : TCCGGTACAGAGTTTTCTGCAGCAAAAAATTGCCCTTGGGCAATTTTTCTGTAGTTGAGCTACATAACGGTCCGCACTAGCCTCAAAAGGGGACAGACCTTTCCCACTCGGGGGGGAGTCGTATCCATTTCTCACGGCCTTGGCCGTAGAGAAATGGAATATACGACCCCTGCGATAGCCGTCCGTGAGCCGAACCCGCAGGGTGAAGGGGAACGGAGCACGGCGAACCGCTGAAAGTGGCACCGTAGGTGCCAATAGGGGCAATCTCCCCAGCGGGCCTTTCCCTCCCTATCCCCTGCAATAGCTTGCATCCTCTCTTTTATTTCGTTATACTAATACTAGTACTGTATTTCATCACCTCAAAACAGCGCCGGGCCGCATGGGGTCTGGCTTTACAAGTATTTTGACGCTGCCCTGTGCACCCATTTTCCCCAATTTCTCCAACAGCGCCGTTTTTTCCTGTTTTTAGCCAGGCAGAAAGCGGGTCTTGGAGGGGTAGG # Right flank : ATCTAATATCCAAATTAAAACAGCAGGCTGTACCATTCTTAACAATAAGCAATGGTACAGCCTGCTGTTTTATGTTTTCCAGCATTCGAATTTAGAACTTCCAAAAACAATCTTTAATAAAAAATCCATCATGGGATGATTTTTGCACAATCCTTATGGTAAAATAAAACTATCAGATAGTTACCACTCGTGGCCCCATGGCCTCGAGGATGATTTTTGTACAATCCTTATGGTAAAATAAAACCATATGTATTAGGCCATTGCCAAAATCGATTTTCCCTAAAACAAGCCTGCAACTGCGGAATGAAATCTCAGCAAGGCAGTAAATGGCAAGGGCTGTTTTATTATTTATTTTTATAGGCAAAGATTCGGTCTAAGCAAAAGAAATTAAATAATCGTAAGATTGGAATATCTCAAGTGGTGAGGAGGAGTTATATGTCACAAGGTGGGTATGACACTCTGGTTAAGGGTGCTCTGCTGCATGATGTGGGGAAATTGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACTAAATGATTCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 26920-20059 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMX01000013.1 Acidaminococcus sp. AM05-11 AM05-11.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 26919 33 100.0 34 ................................. ACTATCTGCATGATGTGGCAGACCAAATAAAGGG 26852 33 100.0 33 ................................. CCCCAGGGCCGTAGAAGTAAGAATCACCCCCGA 26786 33 100.0 35 ................................. GCGCGGAAGACCGCGGGCTGTGCACGTTTGAACAG 26718 33 100.0 34 ................................. ATGGCTGGTCACCTACCTTACTGTGACCAGCTTG 26651 33 100.0 33 ................................. TCGACAGTAAGTCCTGTAGTTGTCCAGTCCATC 26585 33 100.0 32 ................................. TGGGGGCAGTGACCGAGGCGTCCTTTTCGGCG 26520 33 100.0 34 ................................. ACCCGGGTGGTGACCGAAGCCGCCCGGATAGATC 26453 33 100.0 34 ................................. TTTAAATCTTCAGCGGTAATAGTCATATGTTATC 26386 33 100.0 34 ................................. CCACGTGAGGGCAAGGGCTTCCCCGATACGGAGG 26319 33 100.0 35 ................................. CCGTATTCGGACCGTTGATATTTTAACCTGCTGGC 26251 33 100.0 35 ................................. CACCATCGTTCCCGGCATGGTGTCTGCCCTCAGAT 26183 33 100.0 34 ................................. ATAAAAAAAATTTTTAAGTTTTATGTATCCATTT 26116 33 100.0 34 ................................. CCGCCCTGCTCCTTGACGATGGCCCCGAACCAAA 26049 33 100.0 33 ................................. CACCGGAAAACGATTATAGATTTCGCTGCTGTC 25983 33 100.0 34 ................................. CGGTTTGCAGGCAATGCGCAAGGGGATGCAGTTA 25916 33 100.0 34 ................................. CTTGCAGTTGTAAGCCATTGTCCTATTCAGAGTC 25849 33 100.0 34 ................................. CTCCGGCGGTTGCGACGGTGGAAGGCCGCCGCAT 25782 33 100.0 34 ................................. TTGTAGGCATCTCCCAGATCCATAACAATCTGTC 25715 33 100.0 34 ................................. ATCCAGAGTGCCCTTTTGTTTGATGGCATTAACC 25648 33 100.0 36 ................................. AAAATGTAGGAATTTTGTAGGAAACAAGGAAGTGAG 25579 33 100.0 35 ................................. GTTGCCCATGTGGACGACGCGGAACGCCGGGACTG 25511 33 100.0 35 ................................. CCGTGCTGGTAAATCGTGCCGCCGTTATCAATATC 25443 33 100.0 34 ................................. ACACGGAACGATACGCAATCCGAATTTTTCATCC 25376 33 100.0 34 ................................. GGTGTATCTCAGTCCCCGCCCTCCGCCTTTGATG 25309 33 100.0 33 ................................. TACCATGTACGCCGCCGCCGGGGTCACAGGACT 25243 33 100.0 34 ................................. TCCGGCTACCGGGAGGGCAACATTTACTGCACCG 25176 33 100.0 34 ................................. AAAGTTGATGGAGCGCACCTTATCAATGAGTACA 25109 33 100.0 35 ................................. TTATGGTGACCCGAAACGTAGTCTATGCGAACATC 25041 33 100.0 34 ................................. CATCAAGATAAGAGTCCAGGGCCGGAGGCGTCCA 24974 33 100.0 34 ................................. CCGGTCCGCTGATGTAGCCCCCGGAGGCAAAGCC 24907 33 100.0 32 ................................. GGTTTCAGGCTCCACTCCCGGTCATCATCCGG 24842 33 100.0 33 ................................. CCTGGTAAGGCTCACGCCTCCGACGCCCTTCAG 24776 33 100.0 33 ................................. TGCGGCTAACTCATTAAGCCCTTCTGTAGCTTC 24710 33 100.0 34 ................................. CGGAAGGGTATCATGCTGATGTCAGAATGAGAAG 24643 33 100.0 35 ................................. TCATACAATCGGTATCCATGTGTGTGGGAACTTCG 24575 33 100.0 34 ................................. ATGAAAGACCATTGCAGGTTCTCATATAAAGGGA 24508 33 100.0 35 ................................. TGAGGTATAAAAAACATGACTGGAACAAAGAACTC 24440 33 100.0 33 ................................. GTAGCAGATCCGACCGAAATTCCCGGTATTGAA 24374 33 100.0 34 ................................. TTCTGCGCTCAGATCATCGTCTTCCGGATTCCCG 24307 33 100.0 33 ................................. CCGTTGCCGTCTGCAACGGCCTTGTCAGCCGTG 24241 33 100.0 34 ................................. TGCAAAAAGCAGGTGTGATCGCCGATGACCGTTA 24174 33 100.0 33 ................................. CCATCAATCTGCACTCCCTCTTTGCTCAGATTA 24108 33 100.0 33 ................................. AATATCCGGTTACATCGATGACCATACAGGCGA 24042 33 100.0 33 ................................. CTGTCGCGGTGCCACAAAGAATTGCTGTCAACA 23976 33 100.0 34 ................................. TTTTTGTCCCCCTGCTGCTTTTTGGAATGATCTT 23909 33 100.0 33 ................................. CACGCGATCACCTCATAATAATAAATAAGGGCC 23843 33 100.0 33 ................................. TACGAACCATACCCCCTATCTTGTGAAATCTTT 23777 33 100.0 33 ................................. AGGCTGGCATTTAACGCCTCGCGTCCATCGGGG 23711 33 100.0 34 ................................. ATCAGCGCCTCGACGTCCAGGACGGACGGCAGCG 23644 33 100.0 33 ................................. TGGTTGACGACTACGGACGCATTGGCACCGGCG 23578 33 100.0 33 ................................. CCGGTGCCGGAGGAAGTATGGCGGGATCGGGAA 23512 33 100.0 34 ................................. GATGAGATGTACGAAAGAGGGCTGACCAATAACA 23445 33 100.0 34 ................................. AAATTGTTGCCGGCTATTTCTGCGGTTTTATTCC 23378 33 100.0 34 ................................. TAGTCTTACAGGGCTTAAAGCCTTGCACCCCATG 23311 33 100.0 34 ................................. TGGTACATCCGCAGGAATGTATCCCGTACCCGTG 23244 33 100.0 34 ................................. ATTCCATTTCTCCCTTCATCTTCATCTGAGTTAG 23177 33 100.0 34 ................................. CCATAGAATACGTTGGATCTGCTTCGAAAGTTCC 23110 33 100.0 33 ................................. TCTACTATCTGGAAACAAGAAATGGACAAGAAT 23044 33 100.0 35 ................................. TTTGATCAGGTAGATGCGCTGCTGGATAGCATTGC 22976 33 100.0 35 ................................. TACTGATGTCAAGTAAATCCTCTCCTTTCTGCTTC 22908 33 100.0 35 ................................. GCGGGCCATTGTCCATGGTCGTGCCGCCCCAGGTA 22840 33 100.0 35 ................................. CAGGTCGTCGATACGTTCCTCGTCCGCGTCAAGCA 22772 33 97.0 33 A................................ CCTTCGTCCTGAACCGTCTTGAACTTCCAAAGC 22706 33 100.0 34 ................................. ACCATGGAGCAAACGAAAGCCCTGGACGAAGCCC 22639 33 100.0 33 ................................. ACAAGTCGGATGTGGAGGAAATGGTTGCGGCTC 22573 33 100.0 35 ................................. ACCGATGCTCCCGTGGTGGAAGTGATTTCCGCCGA 22505 33 100.0 37 ................................. TCCGACTCCGTCAGGCTATTACTGACTTGCTTCAGCA 22435 33 100.0 34 ................................. GAGGAAGAGATTCATCCTTTTCATTGATTCTCTT 22368 33 100.0 33 ................................. AGTTTCCCGGATTTCATGATTTCCCGCGCTCTG 22302 33 100.0 37 ................................. CCGATGGTGATACCACCGCCGGAAGTGTTTCCTTCGG 22232 33 100.0 37 ................................. ATCAGCGCAGTGCTTGCCGTCTGGATGTCGCCTCCGG 22162 33 100.0 34 ................................. CAGCTGCCGTGCGCCTGGTCGTCCAGGACCACGA 22095 33 100.0 34 ................................. TTTAATGGAGACCGTGGGTGTGGGTTTAATCCAT 22028 33 100.0 34 ................................. ATCATGCCATCTTTTATTGCAGATCTTATATGCT 21961 33 100.0 33 ................................. GAGGAGGTTAAACCGGGGTGCCAATATTGCCAC 21895 33 100.0 34 ................................. CCGTTGCCGCCCATTTTTTCTTGACCGCCGTGAA 21828 33 100.0 34 ................................. TCCACGGTAATCTGAATCAATGGTCCCAACTCCC 21761 33 100.0 34 ................................. AAGCTCGATGCCATAGTCATCAAAGTATGCAAGA 21694 33 100.0 33 ................................. TTCCGACATGAAGGATACACGAAAGCGATTTCC 21628 33 100.0 34 ................................. CCGATTATCAAGGGTGGGAGGAACAAACAATGGC 21561 33 100.0 34 ................................. ACATCTGCCCAATCAAGTCCTGCTCGAAAGGCTC 21494 33 100.0 34 ................................. CACCAGGGCATCAGTCTTGGTGCTGTCGTAGCAC 21427 33 100.0 34 ................................. CCCATGGGCGGCATCTACAGCATAGGCGTATCCG 21360 33 100.0 34 ................................. CCAAATTCTGTATCTAATGTTACAGTTTTATACG 21293 33 100.0 33 ................................. TAAGTTTCTGACGATGGCAATCAGGCAAGCTAT 21227 33 100.0 33 ................................. CTACTTGGACCACGCCATGAATATTTCCGTCAT 21161 33 100.0 34 ................................. GTCCTGCATTCGCAATAAAAATATTTGCTCCCGT 21094 33 100.0 33 ................................. TGGTAGCACGTGCCCAATTCAGCAGCTACGACT 21028 33 100.0 35 ................................. ACGGGCTGGAAAGGCGCGTCTACTGGCCTAGCATG 20960 33 100.0 35 ................................. AGGAAGTCCATTGACATAGTGGGTCACCCAGTAGT 20892 33 100.0 33 ................................. AGGATGTTGTCCAGGTCCGGTTTCTTGCAGGGC 20826 33 100.0 34 ................................. TGCCTGGGCAGGACGTATGCCTCCCAGGTGGTAG 20759 33 100.0 34 ................................. ACCTTGAACAGGTTCATCTCCCGGGCCCGCTGGG 20692 33 100.0 34 ................................. TGGACCCGCTGAACGTTAAGGTGGCAATAGGCAG 20625 33 100.0 34 ................................. AATCAGTTCCACCCGGTCCGCAATCACTTCAGTA 20558 33 100.0 33 ................................. TGGTGGAAACGGCAACATTGGTAACAATCTGCC 20492 33 100.0 33 ................................. GAGGTAAGCTGGAGCCATATGCCTGAGAGCGAG 20426 33 100.0 34 ................................. CGGGGTACCTACCACGGCGCAATTTAAGGACCCT 20359 33 97.0 34 ..........A...................... CTGTAGCACTTTTCCTGCTGCATGCTTCCTGCTG 20292 33 97.0 34 ..........A...................... CTCCCCGTGGTCAGAAAAGTAGACCAGACCCTGA 20225 33 97.0 34 ...........T..................... CTCCCCGTGGTCAGAAAAGTAGACCAGACCCTGA 20158 33 97.0 34 ...........T..................... ATGTAATAGACAAAGTCTTGAATCAGCAGGAGGG 20091 33 87.9 0 ...........T..A.............AC... | ========== ====== ====== ====== ================================= ===================================== ================== 103 33 99.7 34 GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Left flank : AGGCAATATGGCTGTGCAGAAATTGTATGTATTCAAGCATGATTCTGTGATGGGTAATGTACAAGCCTATAAACTGTTTAACTGTGTGCAGGTAGAAAAGAAGGATGCCCAGAAAGTTGCACGCGCGTTTGAAGATTATGCTGTAATAGTAGATACCGCAGCTTGGCCGGCAGGGGTACACTGTACGGAAATGGTTGAGCAAGAAAAAGTAAAAGCATAAATCGACACATCACCATACGTGATAAAATGGCATATAATAAAAATAGATATCTCTTATTGTCAGGAATTCGGCACTTTGCATTTTGCAGGCGACAATGGGCACTTATCCATATTGGAATTAAGGCTGGATATAATCCAGTTGGAAAATTAATCCGGTTATGCGAACCAAAAGCTCCCATAAGTTTTAATAATGATTTTGCGTGCTCCAAAGGACTTGCTTTATGAGATTCGCAAAATTGTAGGTTGAATCCCGCAGGGATTCAGTGTTTTTTTGTTTGACA # Right flank : GGGCCCAGGAATTCGGACCAGGCCTGAAAATTTTAAATGTATATGCTATAGTATAGGTAACAAGAACGGAGGCCGCTGCCATGGAAAGCCATAACTATTCTGCTGAATTTAAGGCCAAAATCGTCTTATCAATCCTTCAGGGTGACAAGGATTTTGCTGTTATTTGTTCCGAAAATCATCTGGATTCGGAGCTGGTTCGGAAATGGAAGCAGGCTTTTCTGCAAAATGCGCATCGTGCTTTTGAGGCAGATTCTGGGCGTAAGGACGTTCAAAGAAAGAAGAAGGAGCTGAAGCAAAAGAGTGACCAGCTGACGCTTGAGCGGGACTTCCTTCAGGACTGTTTTCGCAAGGCGGGAGAAGTCGTTCCCAAAATTCCCCAAAAGGATGCCAAGGACTGACGGTCTGGCTATCTGGCGGCCAAGCGAACTGTCTAGGGTAAAGTGTGCTGGCCTTCCTGTAGCGGCTGGCATGCGGGGGTCCATTGTACCTTGTACGAATTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12644-1747 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMX01000019.1 Acidaminococcus sp. AM05-11 AM05-11.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 12643 33 100.0 35 ................................. GCTAAACGCGCCGGTTCCATCGGACCACACCAGGT 12575 33 100.0 35 ................................. CGAGTCAACAATGCGGACATCATTAAGACTCTGAA 12507 33 100.0 35 ................................. CACGCGCCGGTCCGCTGTCATGCGTGCCCGGCCTG 12439 33 100.0 32 ................................. CAGCAACATTGACTCCAACCTCCTTTAACAGC 12374 33 100.0 33 ................................. ATCCGTATCCCTGTTGTAGAACACCTCGTAGTA 12308 33 100.0 33 ................................. ACGGCGTCCCCGTCGTTGATGTACAACATCATC 12242 33 100.0 33 ................................. TTGAAAGTGTATGTTTTGTACAGGTTTGATGGA 12176 33 100.0 34 ................................. GTACGTCAACGCCTTGTCCGGGTGCTTGCCCTTG 12109 33 100.0 34 ................................. CAGGCGGCAGAACGCCCAGTCTAGCTTAAACGTA 12042 33 100.0 34 ................................. CTCCTTATATCGATAGATACCTTGTTATAAGGGG 11975 33 100.0 35 ................................. ATTGCTGCAGGGATCTGTCATGAGAGGCCACACTA 11907 33 100.0 34 ................................. AGTCACCGCGTCGATATAATCATTATGATACATC 11840 33 100.0 35 ................................. ATATAGATGAACGAGTGACCACACGTTTGCAGGCC 11772 33 100.0 33 ................................. AACCTGCTGAAGGAACTAAATAGCAACTAATAA 11706 33 100.0 35 ................................. ATCTATTGGGTATCCATTAAGGTATCCAATGTTTA 11638 33 100.0 36 ................................. TCATAGATTTCCGTGCCCACCATGAGGGCCACACTA 11569 33 100.0 34 ................................. ACTACATCAATACGGTGATAGAATCTTACGTGAC 11502 33 100.0 35 ................................. ACCTGGTATACTTTACGCTTGGGAAGGTGCTTACA 11434 33 100.0 34 ................................. CGCTTTATTTGGTATCCCGCTGGCTATGCTTAAC 11367 33 100.0 33 ................................. ATTACGGGTTTGCTCTTGATCATGTCGGTTTTG 11301 33 100.0 34 ................................. ATAACCGCTTCAATACCCAGCACAGACGGCAGCG 11234 33 100.0 34 ................................. AGGCAAAGGGCAAGCGGGCGCGGAAACATTAATC 11167 33 100.0 34 ................................. ACCAGCGGTAAACCCTGTTTTTGTTTCCGGTTTA 11100 33 100.0 33 ................................. CATCAGCTCTGCAACTTCTTCGGGGGCGTAATC 11034 33 100.0 34 ................................. AGCGTTGCAACAGCATCTCTTTTGACTGTTTGCA 10967 33 100.0 34 ................................. TTTGATAGGGGTTTCTTTTTTTTTGGTCACACCC 10900 33 100.0 35 ................................. TTTTAAATCTCTATTAAGTATCATTATTATGATCT 10832 33 100.0 34 ................................. TTGATGGCGTCGATGGCGGCAACGGCCCCGAAAT 10765 33 100.0 33 ................................. ACACGTATCCGTGTGTGTCATAAAAAAAGGTAC 10699 33 100.0 33 ................................. CTCTTGAGTTGGCAAACGGCACGCCAGCTCAAG 10633 33 100.0 34 ................................. TCAATCACCGACCTCATGGGGCGGTGGAAATGCC 10566 33 100.0 33 ................................. AATTTGCTGGTAAACGGAATTCTTCAAGGTGTT 10500 33 100.0 35 ................................. CACCAGTATTTTGCGTTTTTTGTCAACCGTGGGTC 10432 33 100.0 34 ................................. GCAAAAAATTGCGAATGGGGAAGCAATCACATGG 10365 33 100.0 35 ................................. CCATATGTAACCAAAAGAAATACAGTAAGACTTTT 10297 33 100.0 34 ................................. CCCATAGCATCCATGGCCTTTCCATGGGCATCTA 10230 33 100.0 34 ................................. AATCGCTCGTAAATAAGCAACATCAATCTCGAGC 10163 33 100.0 34 ................................. TGGGTATCAAGCTGACTTTTGGATGCCTTCATAT 10096 33 100.0 34 ................................. TATTAAAGAGGTGATGAATAGGATTGAATGAAGT 10029 33 100.0 34 ................................. GCTGGTGAATCTGCTATGCAAGCTGCATTTGGTA 9962 33 100.0 33 ................................. ACTTTCGTTTCCGTTTTCCTCCTGGCTACTTTT 9896 33 100.0 34 ................................. TAAGACTTATCCCTTGTACGACTGTCACTCGTAG 9829 33 100.0 33 ................................. CTCCTTCCGTGCATTGAAACTCTAAAAGAGTCT 9763 33 100.0 36 ................................. ATTAATATTTTTTCGTTTGTCATTACTTGGTGGGCA 9694 33 100.0 35 ................................. CGGCATATACTTAACAACAAGGACAGCCGGGACGT 9626 33 100.0 34 ................................. AGAAACACCTGAATTATCAGCATACTATGAATTG 9559 33 100.0 34 ................................. AGAAACGTCTGAATTATCAGCATACTATGAATTG 9492 33 100.0 34 ................................. CATCACACCCAGAATATAGGTGTTGATATGGAAT 9425 33 93.9 33 .........................T......A CGTCTGGCCTGTGTGGACTTGTTGATATGGAAT C,C,C,C [9393,9395,9397,9400] 9355 33 100.0 37 ................................. CGGGTACGTCTGAACTATCCAAGGACTTTGTAGACAC 9285 33 100.0 33 ................................. TGCCGCTCCGGGTCCGGTGATATGACCGTCCGG 9219 33 100.0 35 ................................. ATCAAAACCATCATAGGTGGCTTTGGAGTTTGTCA 9151 33 100.0 34 ................................. CCGTTCCAGAGAGGCACCACGGTGATGTGCCCGA 9084 33 100.0 35 ................................. CCCCTTACACCGAGGAATGGCATTTGGAAATATCA 9016 33 100.0 33 ................................. CGGCTTTCCGGTTCCGGTGGCCTTCATGCTGTA 8950 33 100.0 34 ................................. CGTGTGGTGCGTATTCAGGGCCTTCCATTCCTTG 8883 33 100.0 34 ................................. TGAAAGATTTAAAGAGGTGTGTGGAAACGGTTAT 8816 33 100.0 32 ................................. CAGTATTTCCGCGGCCTTTTTGCGCTGTTCTC 8751 33 100.0 34 ................................. AATATCGGCGATAATTTCGGCAAGGGAAATCCAC 8684 33 100.0 35 ................................. CCCCATCCGACCCGACAATAGTAACTTTTCCCCAA 8616 33 100.0 34 ................................. TTGAAAAGTTGAAGAATTCCAATGTTCTTCTTGC 8549 33 100.0 34 ................................. CTCGATGTGCTTGTATGCCTTCTGGTTGAGATTG 8482 33 100.0 33 ................................. CCTGGCCGCCGTCGGGAGCTTATGCGGCCTGGT 8416 33 100.0 34 ................................. CGGGGCATAATCCCCGTTGCGTGTGTGCAGTCCC 8349 33 100.0 33 ................................. GTTTATGACGACAACTGCACCAATAAAAACGCG 8283 33 100.0 34 ................................. GTCGATGATGTTTTGTTTGCTTTCGGCCATAGAC 8216 33 100.0 35 ................................. CGCTGCCGTCATGGCATCGATTTTTTTAGCAAGGG 8148 33 100.0 34 ................................. ACTGATAGCCATACCCTTCCGTCCTTTCTTTATG 8081 33 100.0 33 ................................. TTTTGGTGCTATGATCCGCACCCCTTTTAGTGC 8015 33 100.0 34 ................................. CTATCCCCGTGCCTTATAGTGCGGGGATTTTCCT 7948 33 100.0 34 ................................. GGTAAAGATGCCGCCCACAACAACCTCCCACCAT 7881 33 100.0 34 ................................. CAGAAATTGGTCAGCTACGTTCATTGGCTTCCGG 7814 33 100.0 33 ................................. TTGCCCAATCTCAGCCCAATTTGCCCAAATGTA 7748 33 100.0 36 ................................. CCGATAAATCCGTTCTGCCGGTGCTCCCGAATCCTC 7679 33 100.0 34 ................................. TTCAGCAGCTGCTCTGTTGCACTCTTCAGGCTCA 7612 33 100.0 34 ................................. CAGCGTTTCCAGCTCCTGCTCGCTCAATGTATAC 7545 33 100.0 34 ................................. TATCATTGAAGGGTGTCTCTCCTTCCCTTCATGG 7478 33 100.0 34 ................................. TGGAATGGCTGGAGCAAGGAGGGGATGCTAGTGG 7411 33 100.0 34 ................................. AAAATGTAGGAATTTTGTAGGAAACGAGGAAGTG 7344 33 100.0 34 ................................. CGCAATCCACACCGTGTCCTTTGGCTTTGCCCTC 7277 33 100.0 34 ................................. ATTCGCCTGCCTAATGGCTGTCCAGTCGGTGTAT 7210 33 100.0 34 ................................. TTCAAAGCTCGTGACTACGGCGGTAAACTGCATA 7143 33 100.0 35 ................................. TCCCAGACCATTGCCCCGATTTTAGAACAATATGG 7075 33 100.0 34 ................................. GCAACGTGCGTAAAAATCCTGGCCCAGAACCTGG 7008 33 100.0 33 ................................. TTAATGGCATCGATGGCGGCCACGGTGCCAAAA 6942 33 100.0 33 ................................. GTCAACCTGAACCAGCTCAACTGGTACGTTAAA 6876 33 100.0 34 ................................. CGTAATGCTCGTTGATTGCCCTGACCACCTGGTT 6809 33 100.0 33 ................................. CCACGTGGATGGGGCGGCTTTCAATCTGCCGAA 6743 33 100.0 34 ................................. GCGATCGCCACGCAGGAAATCTTTCAGGGCGGCG 6676 33 100.0 34 ................................. ATCGGTTTCCCGATTGTAGAACACCTCGTAGTAG 6609 33 100.0 35 ................................. CAGCCTTGCCCCGCAATCCCGGGCAGTAAACAGCG 6541 33 100.0 34 ................................. CAGGAGTGCCAAATGGTGCTATCTCCGCTCCCTT 6474 33 100.0 33 ................................. GGTCGTGTCCGTGGGGCTGGAAATCAGTAAATC 6408 33 100.0 34 ................................. ATACGTCAGCGCCTTGTCCGGATGCTTGCCTTTG 6341 33 100.0 35 ................................. CTTGACCGCCAAAAATCCACTTGCCGTAGTAACCC 6273 33 100.0 35 ................................. CAGGATTGTCGCGGCCTTTTTGCGCTGTTCCCGGT 6205 33 100.0 32 ................................. CGATGTTACCTTCGTCTTCAATCGGAATATGT 6140 33 100.0 34 ................................. CCTGCTCGATGGTGGGAAGCTGAAACTCAACGAG 6073 33 100.0 35 ................................. TCTTATAGATCCTAGAAGTTGAGTTTTGCCACCTG 6005 33 100.0 34 ................................. TGATACCAGACAGCTTTTCCACGGAGAACATCAC 5938 33 100.0 33 ................................. TTGCTGCTTCCGTGGCATTCCCACCGGTTTCGA 5872 33 100.0 35 ................................. TCAGCCGGTACGGGGGCGGTAAAATCCAGGTAATC 5804 33 100.0 34 ................................. ACCAGATTGATACTTATACGATGGAATTGTCAGT 5737 33 100.0 34 ................................. TTTACAGTTGTAAGCCATCGTCCTGTTCAACGTC 5670 33 100.0 35 ................................. CAGATTGCTCTAACCTTGACGGAAGTTGCCCCTTG 5602 33 100.0 33 ................................. GCCGGGACCTTGCGGAATCCCAATTTTCCACCA 5536 33 100.0 34 ................................. CTCCGCAATCTCCGATTTGCTACAGTCCTGGGCA 5469 33 100.0 35 ................................. CAACTGTAAATTTTCCCTTTTGTATGTATTTCGCA 5401 33 100.0 34 ................................. TTGCAGCGTTTCGTTTTTCGCGGCCATTTCGTCC 5334 33 100.0 35 ................................. TACCATTTCGCACCCCCTCACGGTAGAACCGCAAA 5266 33 100.0 34 ................................. CGCGTCGTCCACATGGGCAACGTAAAATTTATCG 5199 33 100.0 33 ................................. CTTATGTAGCGCCCGGGTTAACGCCAGGATAAT 5133 33 100.0 33 ................................. CACATGGGCTGCATAGTCCACATTATTGTAAAT 5067 33 100.0 34 ................................. CACATGATCAGGATAAGGGAAAGGCTTTGCCGCA 5000 33 100.0 34 ................................. CATGAGGGCTTTTTGCATCCCAACATAGCTCACC 4933 33 100.0 34 ................................. CTAAACAGGAAGCCAAAGCCTTTTTGGAAAAGGT 4866 33 100.0 33 ................................. TGTGTTTGTAATCTGTTGTATAAGGTTTCCCAC 4800 33 100.0 34 ................................. CACCATCGTCAGCAAAATCAATGGAACCACAATA 4733 33 100.0 34 ................................. TTTTCGTGGGCCTCCAGCTGTTTCACGGTCATGT 4666 33 100.0 33 ................................. ATCAGGATTTCAGTAGGCAGGATAGGAATGGGA 4600 33 100.0 36 ................................. TATAGATGATATCCATTGTCTACTCCTCCCATTCCG 4531 33 100.0 35 ................................. ACAAAGATTTCACAAGATAGGGGGTATGGTTCGTA 4463 33 100.0 33 ................................. TGCGTCGTCCTCATGGGCAACGTAAAATTTGTC 4397 33 100.0 34 ................................. TGCTCCAGCGTCGTTAATTCCTGCTCGCTTAACG 4330 33 100.0 33 ................................. TCGCCCTCAACGATGTACAGCGTTTCTGTTTTC 4264 33 100.0 34 ................................. AGAACGAATAGCACCATCGTTCGCGCCGTGGCCA 4197 33 100.0 33 ................................. TTTGGCATCCAGGATTTCTTTCAGGATTTCTTC 4131 33 100.0 34 ................................. CGGCGATGCTGTCCAACGGCGAATACGTAATTAC 4064 33 100.0 33 ................................. TCCGGGCGAGATATGTTTGTAAATTGAGCCGGA 3998 33 100.0 34 ................................. TTGTATCCAATATGACGGGATTCCAAGCGGGAGC 3931 33 100.0 34 ................................. AAAGTACAATTTAAAAAATGGATATTTAATAATC 3864 33 100.0 35 ................................. CCGTTTTTTGACCGTGTTAAATCGTTTTTAAAGGG 3796 33 100.0 34 ................................. CCGTTTTTTGACCGTGTTAAATCGTTTTTAAAGG 3729 33 100.0 36 ................................. AAAAAATGGACATTTAATAATCTGAAAACAGAATGG 3660 33 100.0 36 ................................. TTGAGTACATTATAACACTATTGATTATAGATTGCA 3591 33 100.0 35 ................................. CCCTATCTACGGTAAATCCAACACTGTAACACCCT 3523 33 100.0 34 ................................. ACTGTCTTTCGCACTGTTAAGATCGTCCATTTGC 3456 33 100.0 35 ................................. ATCAAGACTACACAAGCCCTTCTCTGCCGGCGTTC 3388 33 100.0 34 ................................. CGAAGTATACACTTTTTAATCCACCGGAATCCCG 3321 33 100.0 34 ................................. TTGGTTATATTATAGCATTATTGAGTAGAGATTG 3254 33 100.0 36 ................................. TTTAAAAGTATCTAAACGCCACGTGTCTCTGCTCAA 3185 33 100.0 35 ................................. AACAATAGCATCATAAATATTCTTTTTATATTTCG 3117 33 100.0 34 ................................. CTTGCCAGGATTGCCCGGGTCCGTCCTCATGGGC 3050 33 100.0 34 ................................. TCCGGCACATTTAATGACGGCTTCCCAGTCGATA 2983 33 100.0 34 ................................. ATGGATGAAATCGACAAGTACCCACGATGGGCAG 2916 33 100.0 34 ................................. GCACGGGAACACGCTTATTACCAGTGTGCCAACC 2849 33 100.0 33 ................................. GCCTTCAACCATGCTGACGGCAGGCCGGATGTG 2783 33 100.0 33 ................................. TCTGCTTGCTGCTCTCATCGTGATGTCCAGTAC 2717 33 100.0 34 ................................. ATCCACGGATGGGGCGGCCCGAAAACCAAATATG 2650 33 100.0 35 ................................. TATAGGTGAGGGCTTTTTCTTTTTGTCCCCTTACC 2582 33 100.0 34 ................................. TTTGCCAGCTCCGCCGTGATGGTGGCGGCAAAGT 2515 33 100.0 34 ................................. CATGACAGTGAAGGATACTGCAGGCAACGAAGTA 2448 33 100.0 34 ................................. CATGAAAGCCACCGGCACCGGCAAGCCTGAAACG 2381 33 100.0 35 ................................. GTGCATTAAGTCTGTTTCGTTCATTTGCCCCTCCT 2313 33 100.0 32 ................................. CACCAGGATCAATAACATCAATCGTTCCTTGG 2248 33 100.0 32 ................................. TTGGTAAGACAAAAATCCTTGGGGTCGGCCGA 2183 33 100.0 33 ................................. CATGACTGGAGCCACGGCCAGGTATTCCTGGTA 2117 33 100.0 34 ................................. CACAGCCTTCGCCGCTTTGACGATGTCTTCAGGT 2050 33 97.0 33 ............................A.... CTTGGCATTGATTGCGTATTGCTTAATCTTATA 1984 33 100.0 34 ................................. ACTTATATATTTCGGGTTGTTGTAGTTCCAGACA 1917 33 100.0 34 ................................. TACTTCCTTCAGACTTTTCTGCGGACGTTTGATT 1850 33 97.0 35 ..............................G.. AAGCTCGGCCATGATATTATAGGTTTCATAGGCCT 1782 33 81.8 0 A.......T....C..........T.A...C.. | TC,A [1751,1755] ========== ====== ====== ====== ================================= ===================================== ================== 163 33 99.8 34 GTCGCTCCCCGCATGGGGAGCGTGGATTGAAAT # Left flank : CGGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATCGGTGTCTCAGTCGTTGCCGGTTTCTTTTTTCGCGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATGCCGAACCGCTCCACGTAATTTGTCCACTGCTTGTGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATCCAAAGACATATCACCAAAATAGTCTCCGCCTGGTCGATCCCCGCATGGGGAGCGTGGCTTGAATTTTTTATTTCTTCTAGCGTCAACCCGTCCACTGTTGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATCCAAAGACATATCACCAAAATAGTCTCCGCCTGGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATTTTTATTTCTTCTAGCGTCAACCCGTCCACTGTTGTCGCTCCCCGCATGGGGNNNNNNNNNNTGGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATTTTTATTTCTTCTAGCGTCAACCCGTCCACTGTT # Right flank : AAATAGGTCAAAAAGTGGTTTTATAACAATGTACATGCTATTGAAATCGAGGATACTATTGCATGAGATGGTATTATGCAATATGTATTGGATTACGGAAAAAGCTTTGATGTCAAATCACTTGACGACTTACTCTAACTGAAGATGATCGATGACGTGGTTGACACTAAATCAATTTTTAGCGAACTGGCAAGAGAATTAAAAAAGAATAGACGAATTGTTAAACGTTGGTATGAACAGAGTGAACCCAGTAAAGAAGGAAACCACCCTTCCTAATTTGATAGATATAAGCCCATTGTCAAAGATATGCTCGCAGCAAAGGATACTTCACAGAGATTCTACTATAAACGAGTCTAGTGGCAGTACATTAAGGATGACCATGGGCTAAATGGGGCACAGTCAACTTTCCGGGCCTACATTTCTTCCATTCCTGAATTTAAGGATTACTTTTCTCAAAACAAGCGAACGTTGAGCTAGACAAATACGGTTCGTTATGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 21823-12775 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMX01000019.1 Acidaminococcus sp. AM05-11 AM05-11.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 21822 33 100.0 32 ................................. TCCGTCATGCCCCGGACGACGTTCTCGGCCAG 21757 33 100.0 33 ................................. TACCACCGGCAGCGGGTGTGCTGCCGGTGCGGC 21691 33 100.0 33 ................................. TCGACAGTAAGTCCTGTAGTTGTCCAGTCCATC 21625 33 100.0 34 ................................. CCGGGCTGCTGCCGGGACAGATGGCTTATCCTCC 21558 33 100.0 33 ................................. ATTATAAACTCCTGCTGGTAGCCTGCCTTGGCG 21492 33 100.0 34 ................................. TAAATGACGCTGGTGCTGGAGAAAGGAGCCTACA 21425 33 100.0 34 ................................. CGTAATGTGAATATCCGTACAGCCCCTACACAGG 21358 33 100.0 34 ................................. AGTGGTCAACTTTTTAATCTCATTGACACCAATG 21291 33 100.0 34 ................................. TATGTCTATGATAAGGGTAAGAAGGTACTCTATC 21224 33 100.0 35 ................................. CTCGTGGAATTGCACCCGTTCCAGATAATGTCACA 21156 33 100.0 32 ................................. TGGACGGGCAACGGAAGCTGGTTTATCGCTAT 21091 33 100.0 35 ................................. CCGTATTCGGACCGTTGATATTTTAACCTGCTGGC 21023 33 100.0 35 ................................. ATTATAATTTCCTTCCTTATTGAGCGTTCTGATTA 20955 33 100.0 34 ................................. CCGTGGTAATACTGAGCAATGCCAGATGTACCTA 20888 33 100.0 33 ................................. TGTCAGCTTTGTCAACGGTTTATAGACAATATC 20822 33 100.0 34 ................................. TGGAAACACCGGAGGTCCGGGAAGCTCTTGCAAA 20755 33 100.0 33 ................................. CGTTTTCGCGCAATCATGACGGCGGCGGCTATT 20689 33 100.0 35 ................................. TTCCAAGCATTTCTTCGCCCACGCTGCAAACGCTT 20621 33 100.0 34 ................................. GTCCTTGATGTTGGTTTCATCGATGATGATTTTT 20554 33 100.0 33 ................................. TTGGACGGCCCCGCCCAGGGTGGCCACGATGGA 20488 33 100.0 35 ................................. GCAAGGTCTAAAAAACGGGTAAAGCACAATAGCTC 20420 33 100.0 35 ................................. GTCCTTGATGTTGGTTTCATCGATGATGATTTTTG 20352 33 100.0 34 ................................. CCACGTTGCCTACGGGTATTTTGGTTAACGCCGA 20285 33 100.0 33 ................................. AACATACGGGCCAAGTTCGGCTTCCAAGCGTTT 20219 33 100.0 32 ................................. GCAAACTCAATATCTGATTCATCATGCCATCT 20154 33 100.0 34 ................................. ACAATCAGCATCTGGGCGATCCGGTCGCCATTTT 20087 33 100.0 34 ................................. TCCCGCCGTTGCCATTGCCTGGTCGATTTCGGCC 20020 33 100.0 33 ................................. ATGATGGGCTTGCTCTCGATCATATCCTCTTTA 19954 33 100.0 32 ................................. TGGACAGGATGTGGTGGCAATTGTGCACCGCA 19889 33 100.0 34 ................................. ATGGTCCGTACCATGGCGCCAAATTGGGGGTTTC 19822 33 100.0 33 ................................. TATGAGTGTCTTAAAAGACACAATGAGGAGGTG 19756 33 100.0 33 ................................. GCGGCCTGCTGCCTGTCGTTGCTGCTGTTTGCA 19690 33 100.0 34 ................................. ACCAATGACGAAGGGCTGAAACGCCTAAACAGCG 19623 33 100.0 33 ................................. CGGCGGCAACGTCACGTTAAATGTGTCCGCGGT 19557 33 100.0 34 ................................. CTGCCAGGGTACGGATTAATGTTTCCGCCCCTGC 19490 33 100.0 34 ................................. ACACGGAACGATACGCAATCCGAATTTTTCATCC 19423 33 100.0 34 ................................. CAGGTTAAATGTTTAATTTCTTGCGGAAATTTTT 19356 33 100.0 34 ................................. CATAATGTCTACCAGGTCAACACCAGCTTCGGCC 19289 33 100.0 33 ................................. AAGGTTCCGTCCCTGAAAAAACTGAAAGGAAAC 19223 33 100.0 35 ................................. TTGACGTCAGTAGGCGCAACGGCTTTAGCCAAGAT 19155 33 97.0 34 .............................G... TTGCCAGGGTACGGATTAATGTTTCCGCCCCTGC 19088 33 100.0 33 ................................. CCACGACGGCACCGTCCCAGAAAAAGCATCGTT 19022 33 100.0 33 ................................. TATCGTCGTCGTCCTCCACAATGTTCAGATATT 18956 33 100.0 34 ................................. AACGGCACCGGACACGGGCGCCGTTGTCACAGCC 18889 33 100.0 33 ................................. ATTGTAGCCCGGGAAAAAATCGTCGTGGCAGGG 18823 33 100.0 34 ................................. TGGACAGGATGTGGTGGCAATTGTGCACCGCAAT 18756 33 100.0 35 ................................. AGGCCATGGATACCGCTACCATGCTGGCGTCCTTA 18688 33 100.0 34 ................................. CGCGAGATCGCACAATGTAGCCGTTTTCCTTATG 18621 33 100.0 34 ................................. TGGCTATACCCCCGGGAATATTACGGCGGGCGGT 18554 33 100.0 35 ................................. ACGGTTCCAAACCTCAACCCGGCGTTCCGCTGCCG 18486 33 100.0 34 ................................. CGCGGGTATCCCGGTGGCCTGAAAAGCGGCCGCC 18419 33 100.0 34 ................................. CCGATTGTCGTAGGCATCGGGCAACCAAAAATCA 18352 33 100.0 34 ................................. ATAGGTCAACGCCTTGTCGGGGTGCTTGCCCTTG 18285 33 100.0 33 ................................. CTAAATAAAATAATTCATCGGTCAACGGTTTGG 18219 33 100.0 33 ................................. CCATTACGCCGAGCAACGTAAATATTGGCTGTA 18153 33 100.0 34 ................................. GAAGCAGAGTCCGGTGGCGGATGGGGTGTAGGCC 18086 33 100.0 33 ................................. TTGAAGACTTTCGTTACTCTCTTAGGCGTTATC 18020 33 100.0 33 ................................. TTACTTTCGTCGTATTCACGGGGTACACCCTTC 17954 33 100.0 33 ................................. TTGCCGTCCGTCTCAGCCAATAAAACAATGGAA 17888 33 100.0 32 ................................. CCGCGCCGGTCTTTCGTCCACCATTTCCAGTC 17823 33 100.0 34 ................................. CGTCGGGTCATTATAAATGAGTTCAAATTCCCGG 17756 33 100.0 34 ................................. TTGCTCACCTCTTTGTTATTTTCAGCTTCCAGGG 17689 33 100.0 33 ................................. ATTCCACGCGGCCGTTGCCGTCTTACCAAATAC 17623 33 100.0 33 ................................. ATAGGTCAACGCCTTGTCGGGGTGCTTGCCCTT 17557 33 100.0 35 ................................. GCGTCGGCCATTCATTCCACCTCCTACAGGTCAAT 17489 33 100.0 35 ................................. CCTGTCGGCAGCATCTACACCTCGCTGACCGACTC 17421 33 100.0 35 ................................. TTGGATCCGCACGGCCCATCTGACCAGCTTTCTCC 17353 33 100.0 33 ................................. CGCCAGAGAGTTTAAGCGTTGGATAACACATGA 17287 33 100.0 34 ................................. CCATCCCGGAAGCCCCGAAGACTCCGAAGCCAGG 17220 33 100.0 34 ................................. CATCTAAAATCCTGGCCACCGATCAGTACGGCGA 17153 33 100.0 33 ................................. CCCGGAGAATCTTGGCCAACTCACCAACTAAGA 17087 33 100.0 34 ................................. TGGAGCAAGGCCCGGTTGACGATTACTACCGAGT 17020 33 100.0 33 ................................. ATCAAAGCCTGTGGAATTGAATCCGGCTTTGAC 16954 33 100.0 33 ................................. CGCCCGGAGGAGGTCGTCCACGTCAAGAGCTGG 16888 33 100.0 34 ................................. CCGCCTGGCACGTTCTTTGCTGAGCGTTTCATCC 16821 33 100.0 33 ................................. TCGGCGTCCACGCCCTTGCTCAGCTGCTCTTTG 16755 33 100.0 32 ................................. ACGGGCAAGACCCAGTCCTCTAAGACCTGGGC 16690 33 100.0 34 ................................. AGCTTATAAACGCTACCGTATCCATTCGGTAATC 16623 33 100.0 35 ................................. CCGGTACTCTTTGATGGCTGCAACGTCCTTTGCCG 16555 33 100.0 34 ................................. CGTCAGTAATTGGTGTCATGTGTTATCCCCCCTT 16488 33 100.0 34 ................................. ACGGATGCTGACAATGACTATAACCGTACTACTG 16421 33 100.0 34 ................................. CACCTCCTTTTGTTACGTTTTCGTAACCACACGT 16354 33 100.0 34 ................................. ACCAGGGCAGAGCTGGCCGCCTTGCTGAAGCTCC 16287 33 100.0 36 ................................. TGGTCGATAAACGCTTTGATCTGGGGCCAGGCTCCC 16218 33 100.0 34 ................................. TAATTGTCGCCAGGGACTTACCACACCATGTAAC 16151 33 100.0 34 ................................. AAAAAAGTGTTGACAATCAAACCGCCCTATGCTA 16084 33 100.0 33 ................................. CATTTGATGTTCTTTCAGCATTTCAATAGCATC 16018 33 100.0 34 ................................. CCTAACCGATACGAGGTTTTCACATAGTTTGCAT 15951 33 100.0 34 ................................. AATTGCTCGTAAATAATCTTTGTTTACGTCCTCC 15884 33 100.0 34 ................................. TCTCCATTTCATACTGATAGGGGTTTCTTTTTTT 15817 33 100.0 34 ................................. AATCAGGTGAAGTTCCTGAATTTGCTGGGTAGTC 15750 33 100.0 34 ................................. CTCATGATGAAGATGATTTAGATTCCCCTGATTG 15683 33 100.0 34 ................................. TTTGATAGGGGTTTCTTTTTTTTTCTTGTCTTTA 15616 33 100.0 33 ................................. CCCTATGGCTTTTGACCATATGATTAGAGGTTA 15550 33 100.0 33 ................................. TGCTGGACAGATTAATGCTGACTGGAATGAAAC 15484 33 100.0 34 ................................. TCGCTTATCAATCTCTTTGGACATGACCGAAAGC 15417 33 100.0 34 ................................. ATAACTACATAGGCAGTTTCGTCCTTCACTTGTC 15350 33 100.0 33 ................................. TCAATTGGTGTCTACTTTCTACATAATTAAATC 15284 33 100.0 34 ................................. CGAACCATACAAGGCATCTTTGTTTAATTGTTCA 15217 33 100.0 34 ................................. GATAAGGGGATATTTGGATATTTGATAAGTGGAT 15150 33 100.0 34 ................................. AGGCCAATGTAAGAGATATGATGGGAGGTAAAAC 15083 33 100.0 35 ................................. TGGTACTTCTACCCATTCTGGTTGGAAACGCCTAG 15015 33 100.0 35 ................................. GGTGACGATGAAGGGGTTAGCCCAGCTGGTGGGAT 14947 33 100.0 34 ................................. TTCAGTCCTTCAATATTTTTCATAGTTATGCCGT 14880 33 100.0 33 ................................. CCCTGGGATTGCAACCAGGGCAATGGCACAGAT 14814 33 100.0 34 ................................. CGAGTCAACAATGCGGACATCATTAAGACTCTGA 14747 33 100.0 35 ................................. CACGACGGCAAAGGTTATGCAGACATTGTGTTTGA 14679 33 100.0 32 ................................. CAGGGAAGCTGGAAATATGCCGGACAAGGATA 14614 33 100.0 34 ................................. GTAGACAGTGGCGAGTCGATAATTTGGAAGCTGG 14547 33 100.0 34 ................................. AATCGTGAGCAAGGCGCAACCACAACATTATACG 14480 33 100.0 36 ................................. TCCGCTTGCAGCTCTCATCGTGATGTCCAGTACCCG 14411 33 100.0 34 ................................. TGCTACGTACCTTAACAACGGGGAAAAGGTGAAA 14344 33 100.0 34 ................................. CAGCTTGCAAGCACAACTCGCTAGTGTTGAAACA 14277 33 100.0 35 ................................. TCTCAAGGTTTTTCATGAGGGCTTCCTGGAGCCCC 14209 33 100.0 35 ................................. AACCCTTTTCCCGTGGTCCTTTGGCCTTGACGGTG 14141 33 100.0 34 ................................. AACGTAATATCCACAATAGGGATATAATGTTTGT 14074 33 100.0 34 ................................. TATCTGCTGCCGTTTAAAAAGTAGCTTCCCGTGC 14007 33 100.0 34 ................................. GTCCAGGGTGCCTCGCTGCTGGATTGCATTAACC 13940 33 100.0 33 ................................. CAGGGCAAAACCCAAAGGGGTTTTGGTCGTGCA 13874 33 100.0 33 ................................. ACTCTGCAAGTGAGAGAAGTGGATGACCTTTCG 13808 33 100.0 34 ................................. CACTGGGAGCGAGCCGGAAGTCGAATTGACCGTC 13741 33 100.0 34 ................................. AGCCCAATTTCAGCCCAATTTCGGCCCAATTTTG 13674 33 100.0 35 ................................. CGCCACCACATCCCAGGACGGCGCACACGCGCTGG 13606 33 100.0 31 ................................. AAGTGACGCCATCGCTTAGAGCATGGTGGGC 13542 33 100.0 34 ................................. CTGGCTCAGCAGGGAGTTGATATACTCCCGTTCG 13475 33 100.0 36 ................................. CTGGAACGGCCCTCAGGTTATGGAAGGCCAGAACAA 13406 33 100.0 33 ................................. TCGATTAAGCTCTGTTGCTCTGCTGATTGCGCT 13340 33 100.0 33 ................................. TTCAACCCGTTTTTTCAATTCCTTCATCGTTAC 13274 33 100.0 33 ................................. ACGGTATAGCCGTCCTGCTGAAAAAGCAGCACC 13208 33 100.0 34 ................................. TTCAACGCCCGTTTCAATGGTGGCGGTTGTTGCG 13141 33 100.0 34 ................................. CGGTGTCTCAGTCGTTGCCGGTTTCTTTTTTCGC 13074 33 100.0 35 ................................. GCCGAACCGCTCCACGTAATTTGTCCACTGCTTGT 13006 33 100.0 33 ................................. CCAAAGACATATCACCAAAATAGTCTCCGCCTG 12940 33 90.9 34 ....A....................C.....T. TTTTATTTCTTCTAGCGTCAACCCGTCCACTGTT 12873 33 100.0 33 ................................. CCAAAGACATATCACCAAAATAGTCTCCGCCTG 12807 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 136 33 99.9 34 GTCGCTCCCCGCATGGGGAGCGTGGATTGAAAT # Left flank : CCAAGCTCTATTACTGGCTAAGTATATTCGTCAGGATCTAGATGGATATCCTGCATTCTTGCATTAAGAGATGAGAGGTGAGGTCAGAGTGCGGATTGTAGTAACTTATGATGTGAATACGGAAACTGCCGCTGGCCGAAAACGTCTAAGACAGGTTGCCAAATGCTGCGTAGCACATGGACAGCGTGTTCAAAACTCAGTCTTTGAGTGTTCATTGGATGAAGCACAGTTTGTGGCATTGCGGGGGCAACTTGAAAGCATTATAGATCTAAACAAGGATAGTTTACGGTTTTACAATTTGGGAAAAGTTAAGCCAGGTAAAATTATCCATGTTGGAATTAAGACTGGATATAATCCAGATGGAAACTTAATCCTGTAATGCGAACTACAAGCTCCTATAAATTTTAATAACGATTTTGCGTGCTCCAGAGGACTTGCTTTATGAGGTTCACAAAATTATATGTTGAATCCCGCATGGATTCAGTGTTTTTTGTTTGACG # Right flank : TTTTATTTCTTCTAGCGTCAACCCGTCCACTGTTGTCGCTCCCCGCATGGGGNNNNNNNNNNTGGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATTTTTATTTCTTCTAGCGTCAACCCGTCCACTGTTGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATGCTAAACGCGCCGGTTCCATCGGACCACACCAGGTGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATCGAGTCAACAATGCGGACATCATTAAGACTCTGAAGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATCACGCGCCGGTCCGCTGTCATGCGTGCCCGGCCTGGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATCAGCAACATTGACTCCAACCTCCTTTAACAGCGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATATCCGTATCCCTGTTGTAGAACACCTCGTAGTAGTCGCTCCCCGCATGGGGAGCGTGGATTGAAATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //