Array 1 8645-9956 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUS01000039.1 Escherichia coli strain MOD1-EC6623 MOD1-EC6623_39_length_35995_cov_35.0275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8645 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 8706 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 8767 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 8828 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 8889 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 8950 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 9011 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 9072 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 9133 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 9194 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 9255 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 9316 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 9377 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 9439 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 9500 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 9561 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 9622 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 9683 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 9745 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 9806 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 9867 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 9928 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51996-52143 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUS01000004.1 Escherichia coli strain MOD1-EC6623 MOD1-EC6623_4_length_220214_cov_36.3147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51996 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 52056 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 52116 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGAATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17107-18843 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUS01000047.1 Escherichia coli strain MOD1-EC6623 MOD1-EC6623_47_length_19716_cov_35.0809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17107 29 100.0 32 ............................. TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 17168 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 17229 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 17290 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 17351 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 17412 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 17473 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 17534 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 17595 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 17656 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 17717 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 17778 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 17839 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 17900 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 17961 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 18022 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 18083 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 18144 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 18205 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 18266 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 18327 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 18388 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 18449 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 18510 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 18571 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 18632 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 18693 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 18754 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 18815 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //