Array 1 140434-141242 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHQ01000002.1 Phocaeicola plebeius strain AM23-23 AM23-23.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 140434 36 100.0 29 .................................... ATATCAAGCCCGATATTCAGTGCATTGTT 140499 36 100.0 27 .................................... AGTACATCTCCCTGCAGCATAAGGTTA 140562 36 100.0 30 .................................... GAAAAGGTTTTGCTCTAATGCTCGTATTCT 140628 36 100.0 28 .................................... GTAGCGGATTTTCCCTTCAAACCATGTG 140692 36 100.0 28 .................................... ACCGCCGGAACAGTAACCGGACAGGGTA 140756 36 100.0 29 .................................... AAGTATGGCCCTTCAAGTCAGCTAAGAGC 140821 36 100.0 29 .................................... ATATGCTACCCATTCCATTGCTGTCAGTT 140886 36 100.0 29 .................................... AAGTCTATCCATACCAAATACAGGCTCAA 140951 36 100.0 29 .................................... TCCAGGACTCATTTCAGCCGTTCGCCCAG 141016 36 100.0 28 .................................... TTAACCAGTAACTAAAGGTAGTCACTTC 141080 36 100.0 28 .................................... TTTTGATGTAGGCTTGTGTATAATGGAT 141144 36 100.0 27 .................................... TACGTATCGCCACGCAGATAGGCTTTG 141207 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 28 GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Left flank : TTATCGATTTTTTATGCAGAGAAAATCAGAAACAGAGTTCCCTTTATTTAAATATTAATGGTAATAGTTAGTTATGACATATCGGATGACCTTATCCGCTCTCGGTTTCAGAGAATGCTGACTAAAAATGGTGCAATTCGTTTGCAATATTCAGTTTATGAGGTTGTTAATACAAAGAGGGTGATTGAGAATATAAAATTAAAGATTGTCGCGTATTCCAAACATTTTAGTGCAGATGATAGTGTGGTCATTTTTGAGATAAATAAGGATACCTTGGTAAAATACGGGAATGCTATTCATCGCGATACTGATATAGTTTTCTTCTAATAATTATAGGCATTACAAACCTAAGTCTTCTATATCAATAACATGGTTTGTAATATGCTGATTTACAATTCGTCTATTGAATTCTATAGATTAAGGTGGGGAAATATTCCGATAAAAATATAGGCTTATTTATTTGATTATTAATAAAAAATATGGATATTTGCACAGTAAGA # Right flank : TAACGCTATCAATAAAAACCGGAATCTACATAAGGTTTAATTGCCTCATGTACTTGGCTATACACCGAAGTCATTCCTATACATTCTAAAAAGAAGATACTTATCAGGAGTCTTCTGACTGCGTTTTTGGCTCTTTGGGATTTCATGATGTCTTTTCTGTGTGCTTGTGTTATGATTGGTACTTTCTTATTTGGTCTTCGAACATAGTGGTTTGTTTTTACAAAGGTAGAAAAAATATGTGTTTTGACATATTATATAAGAAAGTTTGCCAATGGATACCCAGGCATTTCTGAATATTAAGTGAAATGCCTGGGGAATTAAGCCCATAAACTCTTTTATTCCGCATTCTTTTTCAACCATTCCTGTCGGCGAAGGTCAGGAAGGTGTTTTACCTTGAAATGCTCGAAGGTGGCATTGAAGCCGTTTCCGTCGGGGCTGGCTGCCATGAGTCCTACGTGTACGGGAGTGTTGTCCTGAAGCCAGGTATTTCGCATCATGAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 105801-104835 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHQ01000001.1 Phocaeicola plebeius strain AM23-23 AM23-23.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 105800 47 100.0 30 ............................................... TCAAGAGACGCACGCCGCAGACAAAGTTCG 105723 47 100.0 30 ............................................... AAGTCCATCCATGCGGATAGCTTCGTAACA 105646 47 100.0 30 ............................................... CATGTGCGCAAAGTGTACATAGATAATCCT 105569 47 100.0 30 ............................................... TCTAACTAAAATTTTGGAATTATGAAAGTA 105492 47 100.0 29 ............................................... AAGAAATTCGCAAAGTTCGTCTGTGTCGT 105416 47 100.0 29 ............................................... ATAAAAACCAAACTGATTTACAGAAGCAC 105340 47 100.0 29 ............................................... ACTTTCTTGCGCGGTCTCTCACCACGTCG 105264 47 100.0 29 ............................................... TCCATTTGAAGGAATGCGGGACAAATATT 105188 47 100.0 30 ............................................... AATCTGCTGCGGAAGAACCTTATACCACTG 105111 47 100.0 29 ............................................... AGACTTCCACCCGTTTTTTCTGCTCGTCG 105035 47 100.0 30 ............................................... CAAGTAGTCCCATACATCCTTTTCAGTCCA 104958 47 100.0 30 ............................................... CACTGGCTGGAACTGATACGCAAAAGAACG 104881 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTAGGTTTCTGGATTGGCGGTGCGAACGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACGGCCCGCACACCTCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGACGAGAATCTGGTGCTGTATTATCCGTTGAACGGAAAGAAACGCAACCTTGACACAGGAGAAATCACCGAGGACGAAACCATGCTCTGGGATTTCAGCAACAATGCCAAACATCTGCCTCTTCCTTCAAAAGCTAAGTTTGATGATAATGACGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGTCTGTCTCCAACACTCTGGTGTGGAGGCAGTTTTTTATGTGTTATTTTAGGGACAAATGATATTTAAATGTAGAAAAACTTTTAGTATCTTCGAACCATTGGAAACAATTTGCTGTTTTGATGCAAAATTGGGAAGAAA # Right flank : TTATTGGTTGTTTCTTGTTGTCTATCAGTTGGTTATAAGTAAATTTAGAAAAAGTAAAAGTTGTTTCTTGAAGTAATAAGTCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTATCCCACTTGCTTTCTTGCCATAAAATAGTTCAATTTCTCCAAATTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACAGCTGCATTTTCACTACTTGCACAATGGCGTACATAGATAGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAATCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAGATCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAAAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 251586-251418 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHQ01000001.1 Phocaeicola plebeius strain AM23-23 AM23-23.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 251585 36 100.0 30 .................................... AGGTAGGATCTGACGGGATAGCCGTTTTCA 251519 36 100.0 30 .................................... TTGCAATACAAAGTTACAAAGAGCACATTG 251453 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGGTTTTATCATTGTTTTGAATGGTATATCCAAC # Left flank : ACGCAAAACCATGTTTACAGCCGTGAGGTTATAAAGCAGGCTTTAAAACATAATGCCGGAACTATCCACATGGAGTCATTGAAAGATTTCGGAAAAGGTAAGGAGGGTTATGTAAAAGACGAGTATAAGTATCTGCTTCGTTATTGGTCGTATTACGAACTGCAAAGTATGATAGAATATAAAGCGAAATTGGAAGGTATTGAAGTGAAATATATTGACCCTGCATATACCAGCCAGACATGCAGCTATTGCGGAGAACGTGGAGAACGTAAGAAGCAAGAAGAATTTGTTTGTACGAATCCCCAATGTAAACGACGAGGAGAGAAAATAAATGCAGACTTTAATGCTGCAAGAAATATTGCGATGAGTAAAAAAATCGTGAAAGATAATTAGAAAAGAAATTTTCTAATAGGGGCTGCTGGAAGTCCTTAACCTGAGATAGGAAACTATACTCGGGAAGTACGTCAAAACATTGAAATTAATAAACTTAGAAACTAACG # Right flank : TATAAAGTCGTCTGCGATGATGTGCGCATGGGTGTTAATAATCGTGTCTTTTTTTACTTATTTTAGTTATAAGGTAATATACTTATAAGGGTTATTATTGCTAACGCATGTGGTTGTTTATCACATACGTTAGCAATCAATCATTACATACGTTAGTAATAATCAACGACTAACGTATGTAATAATCTGCAAGAAAACTTTGTCATTTCAAATAAAATTGTAACTTTGCCATTACAGTCCCAACTAATAAAAAAGGAGGTCAGTATGTACAAGTACAAGCTCGTAAAGAAAATCAATCCGCAGGATAAGGCAGCACCTAAGAAATGGTATGCAATTCCTATCAGCGAAGTTCCACAGACTGTAAAAGCCATGACACGTGCAGCTACGGAAAACACAACAACCGCTCCCATAGAAATGGAAGCTGCTCTTGAATTACTTGGAAGACACGCACGTCAGCAATTGCAGCAGGGACACACAGTAAGAGTAGGTGATTTAGGTAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGTTTTATCATTGTTTTGAATGGTATATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //