Array 1 1391009-1395819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRB010000001.1 Bifidobacterium polysaccharolyticum strain B14448H7 NODE_1_length_1447099_cov_191.220494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1391009 32 100.0 34 ................................ CGGATGAGGGGCTTGTCGGCCGGTCCTTTCACAA 1391075 32 100.0 35 ................................ TATGTGAGCATAGCGCAGTTAAAAAGGAACTTTAC 1391142 32 100.0 34 ................................ ATGGTGGCTCACCCTATACTTACTATATTGATGA 1391208 32 100.0 35 ................................ CACAGTGATACCCACTTTGTCAGCTACCCACGCGC 1391275 32 100.0 35 ................................ CGTAATCGTCGTATCGGTCATGTGTTGCTCTCCCA 1391342 32 100.0 34 ................................ AGCCACCAACCTGAAAACCAGCCTGCTCACCGAG 1391408 32 100.0 36 ................................ ACCCAGTCGCACGGCATTGCCAAAAGCGTCCGTAAT 1391476 32 100.0 34 ................................ GCCAAGGCACAGAACCTTGCCGCCGACATCATCC 1391542 32 100.0 34 ................................ AACCGAGAACGCCTATGACTGGTCCGCCGTCGTC 1391608 32 100.0 33 ................................ AACACCCCGCCGGACTTCAACCCGCTCAAGAAG 1391673 32 100.0 34 ................................ ATGATATTAGCCTCTCGCTATCCTGATAGGCCCC 1391739 32 100.0 34 ................................ AGCCTTTCCGAGCTGTACTAGACGGGCCTCTTGC 1391805 32 100.0 35 ................................ CAGCAGTCATACCGCTATCCCACGCTTGCGTACGG 1391872 32 100.0 34 ................................ AATCTGTCATGACTGCTGAGAAGGGGCAGCAGGC 1391938 32 100.0 35 ................................ CGGGTTTCCCAAATACTTGTCGTATGCCCAGAATC 1392005 32 100.0 35 ................................ CCTCGGCGGTCGCCAGACGTGACTGCAGGGATACG 1392072 32 96.9 34 ......................T......... ACCTGGGGCACCGGTCAGGTCAATGGGAGCTGCC 1392138 32 100.0 34 ................................ CTGGTTTGTCGCCGTCGTATTGTATGTGGTCTGG 1392204 32 100.0 34 ................................ TTTGCGCACATGATCGTCACCCTCCGAGGCGTAG 1392270 32 100.0 34 ................................ CATACTGATGATGATCGGGCTGATATTTTCGATT 1392336 32 100.0 35 ................................ CTGTTCCGAAAGAACGAGCAGTTCACACCCCCGAC 1392403 32 100.0 34 ................................ GGCGATGGTCCGAGCTTTGGCAAGGTCAAGTATG 1392469 32 100.0 33 ................................ TATCAGGCCCTACAGCAGCAACCAGCTCATGCG 1392534 32 100.0 33 ................................ CTGGAATCGGCACTAGGCAGGAAAATAAGCAGC 1392599 32 100.0 35 ................................ ACTACGGCGGTCGTGGTGCTGGCAAGTCCCAAGCC 1392666 32 100.0 35 ................................ GGCTAGGTCTGGGCCAGTATCACGCGCGTCTTTGG 1392733 32 100.0 35 ................................ ATGGGAGCGGGACGCGGAATACCCAGAGGATAGAT 1392800 32 100.0 34 ................................ AAAGAGGCCCAGCAAGCTACAACCCTCGCTCAGG 1392866 32 100.0 34 ................................ AGCCCGGACGGGCGGCATGTGAGCCTGGCAGCCT 1392932 32 100.0 36 ................................ ATCGTACGGGACCATGCGTGGCGTGAAACCGTTACC 1393000 32 100.0 34 ................................ TATAACGACAACCATATCAGTACAGTCGGTGCAA 1393066 32 100.0 34 ................................ TGAGCCAATCCTCAAAGTGCTGTCCCAAGGTCGC 1393132 32 100.0 35 ................................ GGTTACGGTGGTGCCGTCGTCGGCCCGTACCGACA 1393199 32 100.0 33 ................................ CAAGATGATAACGGCGGTCAAGACACCGAAGAT 1393264 32 100.0 33 ................................ CGCTGATCATGTCGGCAGGCATGCAGCTGCTGG 1393329 32 100.0 34 ................................ TTTCCATCTTGTTGTCAGGGATTAAGCGGCTGAC 1393395 32 100.0 34 ................................ AAAAATATCGGGAACGATAATCGGCCTATTGCCC 1393461 32 100.0 35 ................................ CTTAGACATTATCTATCTCCCTTAAGTGTTTTCAT 1393528 32 100.0 34 ................................ TTGAGCATGAACTATCTAGAGGAGAGATCATCGA 1393594 32 100.0 34 ................................ ACCAATATGGCTATGCACTTTGGGCCAGTATAAG 1393660 32 100.0 37 ................................ CACGGATGATCCTGATAGCCGGTAGCCGCATTGGAAG 1393729 32 100.0 34 ................................ ACATTTCCAGCTTGCATTTGCGCGTAAATAAGCG 1393795 32 100.0 34 ................................ CGGTAAATGGCTCTATGATACTGGGCGCCAGATC 1393861 32 100.0 35 ................................ ACCGACGACCTCAACAAAGGCAAGGAATCCATCGG 1393928 32 100.0 33 ................................ ACCACGATGAAACCTGTCAACGCCGGCGACGAA 1393993 32 100.0 35 ................................ ATTGTTCGCGTCACACGCAGACATCGGGGATGCCA 1394060 32 100.0 34 ................................ CATCCGTATTTCAGCGCCTTCTCGATTCTCTCAG 1394126 32 100.0 34 ................................ CTCTTCTCCTGGGCGCCCTTCTCCTTGGCCTTCT 1394192 32 100.0 34 ................................ AATGATGGCCCAGAATATTAATCATAATCCTGAT 1394258 32 100.0 36 ................................ ACCGTCTGGGCCGCATTTGGCTGTGCATTTTGATAA 1394326 32 100.0 33 ................................ AGCAACGCCGTATAAAACCGTTTGCTTAGGCAC 1394391 32 100.0 34 ................................ CGGCTGCCAATACGCTCGTCGGCCTCTCTCCAGG 1394457 32 96.9 34 .........C...................... CCGCCCAGGCGCTGAGTGCTTTGGATACATCCAG 1394523 32 100.0 34 ................................ ATCGAACAGTTGAAGAGTGATGGTGTATCAGACT 1394589 32 100.0 36 ................................ TCAGCACTAGGCATTTATCCTGATAAGGATGATGAT 1394657 32 100.0 36 ................................ TTATGTGATATGGGAATGGCCCTCATAATCGAGGGC 1394725 32 96.9 33 ........T....................... ATCGGTGACAGCACCCGCCAAGTCAGTCTACAG 1394790 32 100.0 34 ................................ TGCTCGGCCGACATGCCCTTGAGGCTCTCCTCGG 1394856 32 100.0 34 ................................ GGATCGGGCGTGCTCTTTGGTCTCATAGCTGTCT 1394922 32 100.0 36 ................................ AACCGTTCCGCCATGAAGTACGGCAACACGTTCCAG 1394990 32 100.0 35 ................................ TCCAGCCACACATCCAAAGGCGTCCGATACTTGTT 1395057 32 100.0 33 ................................ AAGGGTATGGACCCGCGAGCAGCATTTAAGAGC 1395122 32 100.0 35 ................................ CCTTGAGTAATTATTATTATCACCGTAGTCAAAGT G [1395136] 1395190 32 100.0 35 ................................ GGCTACATGCCGTTCGACCCCAGCACCCAGTCCTC 1395257 32 100.0 34 ................................ AACGCCGATCGCATAGCCACCTACATTGCCAATA 1395323 32 100.0 33 ................................ ACAGATGGTTGGTGGCGGTGCTTGGGTTCGCCC 1395388 32 100.0 34 ................................ CGATCCTTTCTACTCGGCAGCCGGGTTTTTTCTA 1395454 32 100.0 34 ................................ ATTGCTGTTATCGTGAATGTACGTATATTCCATG 1395520 32 100.0 36 ................................ TCCCGTATCCGGCATACCGGGTGTTATATCATCTAC 1395588 32 100.0 34 ................................ TGGGAGGCCTACATATGATCGAGGATTACCAGTG 1395654 32 84.4 34 .C.A....T...G....G.............. ATCAATGCAAAGGCAAAGTTTTCACCATCCATGG 1395720 32 90.6 34 ......T............T.C.......... GCCCAGTCTTGGGCCCACTAAGGCAATGAGAACG A [1395735] 1395787 32 78.1 0 .A.....T....GT.....T........G..G | G [1395814] ========== ====== ====== ====== ================================ ===================================== ================== 73 32 99.2 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : ATCCATTACTACGGGGTGAGGCGTCATATCCCTGTTGACCAAGTGATGATGCTATAGAGTTATGTGTCTTTGTTGTACTGTTTTGTTTTAGCCACGGAAATTAAACGATAGCTAAGTGGCTGGTGTAATTCTGTAAATGGTGCAGTATGTTGACTACTGTTGTGGATCATCGTTAGCGCGAAACGCTAGCAATCATGTATTCACCAGATTCTTCGCGCCGCAAAACTTTACTTCATGACGATATGCGGTCTTAATTTCACATGTTTTTGAGCTGAGTTCTTTTCGCATTTCAAATCAGACAGCTATTCATACGAAGGAAGCTAGAATTTTAGTGAATCGGATGAACAGTTGTTTGATAACTGAATAGTGATGTTATCAACTTGAAGCATCATCTCAATTGCTCGACTAGAAACAGAATCGGGGTACCTGGTTTGGGCTGTTAGGAGTCGTCAGCCATTTAAAGCTGATCGTATATTGGTCATCGGATGTATCATTGTGCT # Right flank : GACCGTTACGAACGGCTCTCTGCTTGCGGCAAATGCATTGCCTCCTACGTGGAAGCCTAAAACGGAAAACTAATCGCGCTGCTTTAAATTGACCAGACAACACTGCCTCTTAGCTGGAATATGTATTAAATCAGTTCTTCCCTCAGAACTCTTTTATAAATTCTGCTCCTCAAAAACATGAGTATGAGTTGCTGCTTTGGTATAGTACCGATCATTTTCATGCCATTGTCTCATTCCTAGGCGCGGGTGTGCCGCCCGGTATAAGCTTGTAGGCGGTGTGTCCACGAGTAGCGGACTTGGAGGTGTGGTCGCCGATGGAGCAATTCGACGATGCAGGTGGCGCGGAATCCGGCAGAAGTGATGCAACCGGTTCTGCATCTGTGCCATCGCACCTGGATCACGCGACTGCTGTGAACAAGGTTTCGGCCCACCCTGAAGCGACTATTCCGGATTCGGAATATTCTCTGGCTGAGATTGAGCAGCGCCGTGCCCGCCCGGTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //