Array 1 108197-106415 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLD01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008073 CFSAN008073_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108196 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108135 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 108074 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 108013 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107952 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107890 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107829 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107768 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107707 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107646 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107585 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107524 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107463 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107402 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107341 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107280 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107219 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107158 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107096 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106993 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106932 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106871 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106810 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106749 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106688 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106627 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106566 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106505 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106444 29 96.6 0 A............................ | A [106417] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125822-124329 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLD01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008073 CFSAN008073_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125821 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125760 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125699 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125638 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125577 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125516 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125455 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125394 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125333 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125272 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125211 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125150 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125089 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 125028 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124967 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124906 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124844 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124783 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124722 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124661 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124600 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124539 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124478 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124417 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124356 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //