Array 1 3039209-3041127 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046291.1 Salmonella enterica strain FDAARGOS_712 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3039209 29 100.0 32 ............................. GATGGTGATCAGATTCGCCAGGTCCCTGTACT 3039270 29 100.0 32 ............................. GGAAATATCGCGCCGTCGTTGTCAGTGTCGAA 3039331 29 100.0 32 ............................. CGGTGGCGATTTAATTTCACCCATGACTTCAC 3039392 29 100.0 32 ............................. GTCAAATATGAGTTGTAGAATTTGCATGGTAA 3039453 29 100.0 32 ............................. CGGCGGCATCGGCTGGCAGTTATCGCGGAATT 3039514 29 100.0 32 ............................. AATAACCCCGCTCCCGTTCACTGGAAACCAGC 3039575 29 100.0 32 ............................. ATCGTTGTTGTTCGCGTGGCCGAGGGCGAGGA 3039636 29 100.0 32 ............................. CCACGGCGACCGACTCAGTAAACGTAATTGCG 3039697 29 100.0 32 ............................. GTCGACACCAACACAGGCGCATTTAAAATCTG 3039758 29 100.0 32 ............................. AAAATCAACGAAATCCAATCGCTGGCTATCGA 3039819 29 100.0 32 ............................. TTAATGACGTCGCCCTCGCCATCTGCGACCTC 3039880 29 100.0 32 ............................. TGATATAGCCATTTGTAAACGCTCGCTTGGGA 3039941 29 100.0 32 ............................. CTTTCCTGCGTCCAGATGAGTGAATATCTCAT 3040002 29 100.0 32 ............................. GTGTTGAATACAGCCGAACCGATCACGCTGAA 3040063 29 100.0 32 ............................. CCCAACATGCGTACGTGTGACGCGTCTGATAG 3040124 29 100.0 32 ............................. CCGATCATGCCGCTGTCTTTGTCCAGTACGCG 3040185 28 96.6 32 ........-.................... CCGGTTATCGCCGAGCAGGTAGCGCGCGAGCA 3040245 29 100.0 32 ............................. GAGGTTGCCATCAAAATAGAATGTCGTGGAGA 3040306 29 100.0 32 ............................. GTATTGTGTTCAGTAAATGTATTGGTTTTATC 3040367 29 100.0 32 ............................. CTGAGTCAAGTGCGCGAGTCCAGGCTGAGAAA 3040428 29 100.0 32 ............................. GCGGGAATACGGGAGCGCGTGAGGGAGCCGCA 3040489 29 100.0 33 ............................. GCAGTCAATGTAGGAATAAAACTCGCAATGAGC 3040551 29 100.0 32 ............................. GTCCGTTCGTCGGCAGGCGTGGTCAGGTCAGG 3040612 29 100.0 32 ............................. CGAGATGTCGCGGTCACTGGCTTTAATCCAGC 3040673 29 100.0 32 ............................. ACCGTCAGAACCCTCACACCACGCTTCGTGCT 3040734 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 3040795 29 96.6 32 ..........T.................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 3040856 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 3040917 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 3040978 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 3041039 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 3041100 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3057263-3058698 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046291.1 Salmonella enterica strain FDAARGOS_712 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3057263 29 100.0 33 ............................. GCTGTAATAGCCTCTTCTGCACCATAGGCCAGC 3057325 29 100.0 32 ............................. GTCAGAACGGTAAACGGCTTACCGCGATTAAA 3057386 29 100.0 32 ............................. CCGTGTAATAATTCGCGTCCGGGAACTCCTGT 3057447 29 100.0 32 ............................. GTTCGTTCTGTTTCTTCAGCCTGGCGCAGAAG 3057508 29 100.0 32 ............................. AATAATTCGCTTTGCTGTCATATTCACGCTAT 3057569 29 100.0 32 ............................. CGGCTTGTCTGTTGATTATTGTTTCGACCTCA 3057630 29 100.0 32 ............................. CGCAGTCGACGCCGGGACCGCATCGCAGGAAC 3057691 29 100.0 32 ............................. TGGGATACCCCGTTAACCGTGGGGTAATGTAT 3057752 29 100.0 32 ............................. CTGGCCACGCCCGGTTTAGCGGGTAAATTCTT 3057813 29 100.0 32 ............................. CCCGTTTGGTAAACCCGGCTATCGCATCTGGG 3057874 29 100.0 32 ............................. GTGGCGCGGGCGGCTGCGCGCCAGGGACAAAA 3057935 29 100.0 32 ............................. CGTTGCAACTGGAGATCTTGCCCTGTATTGAT 3057996 29 100.0 32 ............................. ACAACGGGATTGTTTCCAATTTCGTCCATTTT 3058057 29 96.6 34 ............................T GAGCAAAAAAGAGTACTCATCAACCAAATATTTA 3058120 29 100.0 33 ............................. GCAGCGTCAGGAGAGAAAAATCAATTCAACGCC 3058182 29 100.0 32 ............................. TGTACCTTCTTTTCAATCTGAATTTTGCCGCT 3058243 29 100.0 32 ............................. GCGACTCAGAGCATATTGCCCCCGAACGCAAT 3058304 29 100.0 32 ............................. TTATCGAAGGGGAAGGGCAATGAGCAACATCG 3058365 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 3058426 29 100.0 32 ............................. CCAAAACTGAAATGACCAGTTACGTTGATCAT 3058487 29 100.0 32 ............................. CTGCGTGATGAATTGAATCTATCACAATCAGA 3058548 29 96.6 33 .............T............... GCGACCACGAGGCCGCCCAGTACGCTGAACAGC 3058610 29 96.6 32 ..........T.................. CCGCTTTGCTGGCAACATTCACCACATAGCCC 3058671 28 82.8 0 ............T.........-.C..GT | ========== ====== ====== ====== ============================= ================================== ================== 24 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //