Array 1 5128-3640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNG010000007.1 Listeria monocytogenes strain 2013L-5444 NODE_2_length_490963_cov_82.8171_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5127 36 100.0 30 .................................... CGGGAGGCATTGAAACCCTTGACTACATTA 5061 36 100.0 30 .................................... CAACGAGAAGGCACATATATTGAAACGACA 4995 36 100.0 30 .................................... ATTGGGCTACGAAAAACCAACGTGAAGCCT 4929 36 100.0 30 .................................... GATTGGTAAAGGTATCGCGGCAACAATGGG 4863 36 100.0 30 .................................... CGAGTTTGGGGATTTTAACTCACAAGACGA 4797 36 100.0 30 .................................... TAAATCTGTTTGTGATGGAATCTTTTTAGT 4731 36 100.0 30 .................................... AGTTAGAAGTATTTCCGCAACAGGTAGTAA 4665 36 100.0 30 .................................... TTACGTGATTTTAGTCGGCATTGGTTGGCT 4599 36 100.0 30 .................................... TAGAAAAATTCTCTGTTTTTCTTATAGCCC 4533 36 100.0 30 .................................... CGAACAAAAATTACAAAGCTACTGCTGGTG 4467 36 100.0 30 .................................... TTTGCTATCTGACCAGATGAGCCACCGCCT 4401 36 100.0 30 .................................... CTTAGACATAGCTATTATTGTAGATAGTCT 4335 36 100.0 30 .................................... ATATTACTGGTAAGAAAATACCAAGTGAAT 4269 36 100.0 30 .................................... GATGGTAAAGGTGGTTATGAGATTCCAAAA 4203 36 100.0 30 .................................... ATTAGTTTATGATATCACAGCATTTCTTCC 4137 36 100.0 30 .................................... TTTGTTCTGGTTCATTTGGTTCTGTCGGTT 4071 36 100.0 30 .................................... ATCTAACATACTATATAACTAAAACACAAA 4005 36 100.0 30 .................................... ACTCAGAAACGAATGAGCTTTTGCATTTAT 3939 36 100.0 30 .................................... TAAAGTATTTGCGAACATCAAAAAAGATTA 3873 36 100.0 30 .................................... AGAATTCGACGGCGTGCTAACAGAATTACC 3807 36 100.0 30 .................................... AAGCGCTGTAATTGAACTATATTTCTTTCA 3741 36 100.0 30 .................................... ATTCCATGCGGTGTCCGGAGCTAACAAACT 3675 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAAGTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACGGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGGATCTCCGCATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCCTTAAAAAAGGAGCCCCCAACCATGAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 277924-276736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNG010000015.1 Listeria monocytogenes strain 2013L-5444 NODE_3_length_421194_cov_80.2388_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 277923 29 96.6 34 ..........T.................. TAGCAATGTACGGTGTCATTTGTGCGGGTCTCGG 277860 29 100.0 34 ............................. TTCAAGAAAAGCAAGTTGTCGATAATGATAATTC 277797 29 100.0 34 ............................. GAAGCAAGACGAGGGTATTGTATTACAATTTGCA 277734 29 100.0 34 ............................. TTCTTCATCGCTTTGTACAAGTTTGTTGCTTGAT 277671 29 100.0 37 ............................. AGTGGAGTTGTAAATACGAATGATACCTCACCAGTTT 277605 29 100.0 35 ............................. ACAAATCGGCGTAACAGTTTTAAAAATGTACTTTT 277541 29 100.0 35 ............................. ATGGCTGTTTCAGTATCCGGAATTTCGATTTTAAA 277477 29 100.0 35 ............................. TTGATTCCCCACATAGGTGCTGCGTTTTCACTTTC 277413 29 100.0 34 ............................. ATGACAGGTAACATTGCAGTGACTAATGCACCCA 277350 29 100.0 36 ............................. ATAAATAGTCAACGGAAACATTGAAATAATCGGCAA 277285 29 100.0 38 ............................. AATAGCCCTTTCTATTATCGTACCATGACAGTTTTGTG 277218 29 100.0 35 ............................. CGCTGTACTTCTTTTTTAACCTATATAATGACAGC 277154 29 100.0 34 ............................. TCCTTTCAGCTTCAAACACTTAATTGATTGCATA 277091 29 100.0 37 ............................. CAAATTAAGTTAAATTTTAATTTAGCGCAACAGGATT 277025 29 100.0 37 ............................. TGCTGTCACAGCCTGTTTCGTTTAACGGTATTTTCTG 276959 29 100.0 34 ............................. AGGCATTCTTGCGGATGACTATTCTTACACACAT 276896 29 96.6 36 ...A......................... TAATCTAGTAGATGGGAAAAAATCAAGATTCTTCTT 276831 29 100.0 37 ............................. TAGCCACCATCTGATTCATGCTCCCAGCCGTATTTGT 276765 29 93.1 0 .......................C....C | A [276740] ========== ====== ====== ====== ============================= ====================================== ================== 19 29 99.3 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATAATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGAAAATCATTGGGGGAGAAAGAGTTTGAGATTTGTAAGTGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCATAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCCAATCCAAGCCTTTTCCTACACTCCCCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTTGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCTCCTGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACGCCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGATAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 295619-294818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNG010000015.1 Listeria monocytogenes strain 2013L-5444 NODE_3_length_421194_cov_80.2388_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 295618 29 100.0 35 ............................. ACAATTATTACGCAGGCTATCAGCATGTGGATCCG 295554 29 100.0 36 ............................. ATCTTAGCTAGATAGGGTTTGCTGTTACTACGATTC 295489 29 100.0 36 ............................. TGGAAAAGGGTTTAAGTATGTGAAGGAAAATATGGA 295424 29 100.0 36 ............................. GCAGATGCGTATATCTTAATGTTCGATGTGCGTAAC 295359 29 100.0 35 ............................. TTTCGAACAATACAGAAAGCTGTAAATGAAATTCC 295295 29 100.0 34 ............................. GTCTTACATGTTGCGAATAGAGAGTTGTCTGTCG 295232 29 100.0 34 ............................. TTGGATCAAACGTATCTCCTACACTTAGCTCTTT 295169 29 100.0 34 ............................. AGGTGATACATTTGTTTATGTATTTTTCAGCTTC 295106 29 100.0 38 ............................. TTTTTTGCAGTAATGGCGCGCTGTCAACGATTTTTCCA 295039 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG 294976 29 96.6 36 ..............A.............. TCGACATAACACATATATTTAAAATCATTAAAACTC 294911 29 100.0 36 ............................. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 294846 29 79.3 0 A.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 98.1 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGTTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCAATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCACCAATTTTCTTGTTTTTCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //