Array 1 377-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFI01000203.1 Acinetobacter baumannii strain ABBL063 contig-4000038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 376 29 100.0 31 ............................. GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 316 29 100.0 31 ............................. AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 256 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= =============================== ================== 3 29 98.9 32 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : GTGATTCACAGGTGCTCGGTGATTTACTTGGTCAAATACCACTTGATGAGCGAGTAGATTCTGTCTATACCGATGGAGCCTATGACACTAAATGCTGCAGACGAGTGATCTCAGATCGTCAAGCATATGCGGTGATTCCGCCAAGAAAAAATGCGAAACCGTGGAAAGATACAAAAGTTCATTCGCAAGAGAGAAATGAATTACTAAAAACAGTTAAGCGTCTAGGAAGAGCCCTTTGGAAAAAGTGGTCTGGTTATCATCGGCGAAGTTTGGTCGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCTACTCAAGGAATTTTGACAGCCAAGTGAATGAGATCCATGCACGTGTAGCCGTATTAAATAAATTTACAGAATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCA # Right flank : CTCTATAGTCAAACTACTTTATTATTCATACAAGATTCGAAAAAAACTCGAAATAACTCATCGACTGAGTCGATCAACCATTCTTTACGCTTACGTTTAACCCATGCCCACATCTGTTCTATAGGATTTAAATCAGGGCTGTATGCAGGAAGCCAAAGAATTTTATGCCCTTGTTGTTCCAATAACTCCTGAATATCTGCTCTTTTATGAAATGCTGCATTATCCATA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9453-12363 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFI01000142.1 Acinetobacter baumannii strain ABBL063 contig-28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9453 29 96.6 32 ............................A ACAGCACCTACAGCAATAACAACTAAACCGAT 9514 29 100.0 31 ............................. TAGACATTTCTTTAATTATCGGGTCTTCACA 9574 29 96.6 31 ............................A CAAGGCTTTGGCGGTCAGTCACAGCAAGTAC 9634 29 96.6 31 ............................A AGATGCTGAGGATTTTAACTATTCACTTAGA 9694 29 100.0 31 ............................. GTGTTTAGTGGTTGTATGAAGCAGAATGGAC 9754 29 100.0 31 ............................. GATTGAATCGGTGGTGGTGGCTCGCCTGGTG 9814 29 96.6 31 ............................A GTTAGACAGATTTACTCGAATATCAATGGAT 9874 29 100.0 31 ............................. GCATCAAAATAAACATACATTGGATAGCCAA 9934 29 96.6 31 ............................G TAGCGGTCCCCAAAATTAACTTTGCAAATAT 9994 29 96.6 31 ............................A TCAGCTAGACGAGTACAACCATCGTTAGGCG 10054 29 100.0 31 ............................. CGATATATTTTGTTACATCTTTCGCTGTTAT 10114 29 96.6 31 ............................C GTTGAAACTTTATCGTCAAGCTCAAGATTAA 10174 29 100.0 31 ............................. AACTTCAATTGTTCTCAACATTGAGTAGAGC 10234 29 100.0 31 ............................. CGCCATTAATAATCAGCCTGTCACCGGCAAC 10294 29 100.0 31 ............................. TTCTAGGCATCTAAGGAAATCCCACCTCTTT 10354 29 100.0 31 ............................. CTCTGATTACTGCTTTTTTTAAATATGATTA 10414 29 100.0 31 ............................. TCTCGTCGTCGTCCCTCCTCCTCGTCGGCAT 10474 29 96.6 31 ............................A GACGACAATTGGCAACGTGCTGAGGTTGAGT 10534 29 96.6 31 ............................A TTCTTCGATGCTGCACGAGTTATTGCAGGCG 10594 29 96.6 31 ............................A TAAAGAATTGGAACAGGATTACCTTGTGCAA 10654 29 96.6 31 ............................A ATAACCGGCAACAACTCAGTCGAAGTACCAG 10714 29 96.6 31 ............................G ATGCAATTCTTGTAAACTCCCAACTGGCTCG 10774 29 96.6 31 ............................A GTTGATGGAAAGCCCCAATTTAGGCGCATAC 10834 29 96.6 31 ............................A GATGGCGCAGCTCCTCCAAGTCCTACAGGCA 10894 29 100.0 31 ............................. TATGAATCTTTGCCGTCTGACTATACAGATA 10954 29 96.6 31 ............................A AAACAAGAACTGTTACTAGAATTGCTATTGC 11014 29 96.6 31 ............................A GCAGGCGAAGAAACGTAAAAAAGGTCGTAAA 11074 29 96.6 31 ............................A ATCTGATCCATAAACGTTGTGCCCTTGAAGA 11134 29 96.6 31 ............................C ACAGGAATGGTTGCAAATCGGCTATGTTACA 11194 29 100.0 31 ............................. TTACTTAGCAGCCCAAATTTATTCTAACAAC 11254 29 96.6 31 ............................A TAATTACTTTAAGCAACAACCACAAGGCTTT 11314 29 100.0 31 ............................. ATGCAAATTTTAAATAGTTAAATTGCGAAAC 11374 29 100.0 31 ............................. ATTAAATCAGGCTGTCAAAATGGCGCGACTT 11434 29 100.0 31 ............................. TGATCTGAATATACGGTGCATAAGACGAATC 11494 29 100.0 31 ............................. TAAGGGGTCAAACTATGAAATTAACCGATGA 11554 29 100.0 31 ............................. CCGACTGATCCGCCTGACCAACCGCCTCCGA 11614 29 96.6 31 ............................A TGTGCGATCATTAGCATTAGGTGCAGATTCT 11674 29 96.6 31 ............................A CCATGTGAACATGCATGCATTGATGCAATAT 11734 29 100.0 31 ............................. TTTTAGGCATGTGTGGCGGTGATAAAGCAAT 11794 29 100.0 31 ............................. TGCACTAAACGCTTAGTTACAGACCAACCTT 11854 29 100.0 31 ............................. GAGCCGTCAGTCGGTTTAAAATCAACAGCTT 11914 29 100.0 31 ............................. AACTCTATTGTTGTTATCCCGACATCTATTA 11974 29 100.0 31 ............................. CTATTTTTCCATTCGGCACATGCTTTTTTTA 12034 29 96.6 31 ............................A TGACGCTGTTGCAGCTAAAGTCATTTCCAAT 12094 29 96.6 32 ............................A ATTACCCCAATTACTGCTACAGCACCCCCAAT 12155 29 96.6 31 ............................A AGTCTCGGTAAACGTAGAGATAGAGATACGC 12215 29 100.0 31 ............................. GTTAGGAGCCAAAAACTCACTTAAGATAGCC 12275 29 96.6 31 ............................A TAGTCGCTTGCGGTACGATCTTAGCTGCACC 12335 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 49 29 98.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTCAAATGAATAAGTCGACACCTAAAATTTATCGCACAACCAATTGGCCCACATACAACCGAGCTCTCATTAATCGTGGGAATATTGCCATTTGGTTTGATCCCAAAACACAATGGTATGCTCAACCAAAAAGCCAACATGGTCGAAATCAAACTTATTCCGATACAGCCATCCAATGCTGCTTAATGATTAAATCCATATTTCGTCTTTCTCTACGCATGGTCACTGGCTTTGTACAAAGCCTGATTAAACTTTGCGGATTAGATTGGACAGCGCCAGACTATACGACGCTTTGCAGAAGACAAAAACATATTGATATTGCGATTAGCTACCAAAAAAGTAGCAATGGTCTACATCTACTCGTAGATTCAACTGGTTTAAAGTTTTTGGGCGAAGGTGAATGGAAACGGAAGAAACATCAGCCTGAATATCGTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13443-13591 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFI01000142.1 Acinetobacter baumannii strain ABBL063 contig-28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 13443 29 100.0 31 ............................. GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 13503 29 100.0 31 ............................. AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 13563 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= =============================== ================== 3 29 98.9 32 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : GTGATTCACAGGTGCTCGGTGATTTACTTGGTCAAATACCACTTGATGAGCGAGTAGATTCTGTCTATACCGATGGAGCCTATGACACTAAATGCTGCAGACGAGTGATCTCAGATCGTCAAGCATATGCGGTGATTCCGCCAAGAAAAAATGCGAAACCGTGGAAAGATACAAAAGTTCATTCGCAAGAGAGAAATGAATTACTAAAAACAGTTAAGCGTCTAGGAAGAGCCCTTTGGAAAAAGTGGTCTGGTTATCATCGGCGAAGTTTGGTCGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCTACTCAAGGAATTTTGACAGCCAAGTGAATGAGATCCATGCACGTGTAGCCGTATTAAATAAATTTACAGAATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCA # Right flank : TCTATAGTCAAACTACTTTATTATTCATACAAGATTCGAAAAAAACTCGAAATAACTCATCGACTGAGTCGATCAACCATTCTTTACGCTTACGTTTAACCCATGCCCACATCTGTTCTATAGGATTTAAATCAGGGCTGTATGCAGGAAGCCAAAGAATTTTATGCCCTTGTTGTTCCAATAACTCCTGAATATCTGCTCTTTTATGAAATGCTGCATTATCCATA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 303-2852 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFI01000096.1 Acinetobacter baumannii strain ABBL063 contig-2000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 303 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 363 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 423 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 483 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 543 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 603 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 663 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 723 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 783 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 843 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 903 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 963 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 1023 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 1083 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 1143 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 1203 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 1263 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 1323 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 1383 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 1443 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 1503 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 1563 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 1623 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 1683 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 1743 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 1803 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 1863 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 1923 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 1983 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 2043 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 2103 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 2163 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 2223 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 2283 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 2343 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 2403 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 2463 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 2523 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 2583 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 2643 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 2703 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 2764 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 2824 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 43 29 98.2 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TAAAACGTGCAGCACGTTCATATTGATAAGCATCAGGATACTTTTCAACATCTTCACGTAAAGCATCATCGTTAATTTTAGAAGGTTTACGTACACGAGTTTTTTTAATCTCTATACGTTTCTTCCATTCAACAATGGTATTTTTATTAATTTCAAATTGTGCAGCTACTGCTCGAATAGAATAACCTTCCTCAAGCTTAGCTAAAATTTTACGTCTAAAATGTTCTGAATAACTCATTGCACCATTGTATTGGTTTTATAATGATTTGACTATACACCTTCGCGAATAAGTACGCAGGGCTG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCAT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29234-21994 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFI01000269.1 Acinetobacter baumannii strain ABBL063 contig-78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 29233 30 100.0 30 .............................. TGAATATCCACATTTAATAAGAGAAGCTAC 29173 30 93.3 30 ............................AC TTGCATTTACAGCAGCAGTTGTCTCTTTGA 29113 30 93.3 30 ............................CA CTCAAGGCACACTTGCAACCCGTTAGCGTC 29053 30 93.3 30 ............................AA TTCGTTTTTAAGCCATGTCAGCTTGTTATT 28993 30 93.3 30 ............................AC CCCGGATGTTGGGTTGGTTATACCCAAATA 28933 30 96.7 31 ............................G. CAGAAAATGGAAACGTATTAAAAGGCTGAAA 28872 30 100.0 30 .............................. TGGATAGTTTAAAAGTACGTTTTGAATGGT 28812 30 96.7 30 .............................A ACTTTCTTTGTAGCTCTAGTATATCTTTCC 28752 30 96.7 30 .............................A CAAATAAATCCTGAATGTCGTGGAAAATAT 28692 30 93.3 30 ............................AA GAATAAATCTTAATAAATAATCATACCATA 28632 30 100.0 30 .............................. TAAGTGTTTGTTTACATATTGTGTGCATCT 28572 30 100.0 30 .............................. TAAGTGTTTGTTTACATATTGTGTGCATCT 28512 30 93.3 30 ............................AA TTAGACACTTCATCGTGTATCGCATATCCT 28452 30 96.7 30 ............................A. AAGGTAAGAATGATTGAATATAATCTTGAA 28392 30 93.3 30 ............................AC TAGACGAGAAAGAAATACACACGTATCACT 28332 30 93.3 30 ............................AA GGTGAAATAGAATATTAACCAACTAAATAC 28272 30 96.7 30 .............................G TTGAAGAGCAAGCATTGCAATTGTTGTTAA 28212 30 96.7 31 ............................C. GCCTTCAATAACGATGTTGAATATGATTTAA 28151 30 93.3 30 ............................AA TCAAACTTGAAATGAAAGTTTATGCAGTTA 28091 30 100.0 30 .............................. CAAAGTTTTAATTGCGTCATCTATAGCTTT 28031 30 93.3 30 ............................GG TTTAATTCAGTCCATATCTAAGCAGACCAC 27971 30 93.3 30 ............................AG CATCATAGCCATCAACGGTGGTTTTCCAGC 27911 30 100.0 30 .............................. CGGGTGGTTTTTTTATTGAGCGCAATTTAT 27851 30 93.3 32 ............................CA AATATCAAACCCATTAAAAGTAATATTTTTAT 27789 30 96.7 30 ............................A. TGTGAAAGGCTTGGACAATACGCAAACTTT 27729 30 93.3 30 ............................AA AGGGGAATAAATCAATGGAAGTAATTGTAA 27669 30 93.3 30 ............................AC ACGACGAACTCGTGTTCAAGTCGAACTGGA 27609 30 93.3 30 ............................GG TAAATCTAGGTAACGTGGGAACCATTCAGC 27549 30 93.3 30 ............................AA TTCTCCAGTTCTTTTGAAGGCTCAAAGTCT 27489 30 93.3 30 ............................AA TCGAAATGACAGCGATGGACCGCAATATTT 27429 30 93.3 30 ............................GC AGATAAGTGGTTGCGTAATGATGTGGCTAA 27369 30 96.7 30 ............................G. GATCAATATTCAAAAATTCAAGCTTATCAA 27309 30 93.3 30 ............................AA CTAATCGGCAATCCTCTGTCAGCTTGATAA 27249 30 96.7 30 .............................A AATACAATGGAACAGAGACTGTTAAGAATG 27189 30 96.7 30 ............................A. TCATTGGTGGTGAGGATGAGGACCAATGGA 27129 30 93.3 31 ............................CA TTTTTACGCATAACAATATTACCTTTACGCT 27068 30 96.7 31 .............................A TTTAAACCATTGCGTTAAAAACAATTCATAT 27007 30 96.7 30 .............................G CTGTTGTGCTTGTTGCGGTTGGGATGCTTC 26947 30 93.3 30 ............................AC TAATTCAACAGGTACGGCATACGTTAATCC 26887 30 96.7 30 .............................G ATGATGTTTGTTGGATTGCAACTGATGAAG 26827 30 96.7 30 .............................A GTGAAGAAGTATCAAACATTGTTCAAGTAA 26767 30 96.7 31 .............................G TTAGAGCCACACAGCAAGCTACGCAGAATGT 26706 30 100.0 30 .............................. CTTCATCTTTAAATTTTCGCATTGCTGTGC 26646 30 100.0 30 .............................. TTAGATCGTATTCGTCGTGAAAAATTACCA 26586 30 100.0 30 .............................. TCACAAATGAAGTTCGTGCAGTTGAAGAAC 26526 30 96.7 30 .............................C ACCTGACCACTTGGCTGAATGGTGCTTTAT 26466 30 96.7 30 .............................G ATCGGTTGCACCTGAAGGATATTTACCAAG 26406 30 96.7 30 ............................A. CTGAAACTGAGCCTCAGTCTTAAATGGAAC 26346 30 93.3 30 ............................CA TGAAGATTACACCCACATGATCATTCATCC 26286 30 93.3 30 ............................CA AAAAATTAATAACTATTAACCCGCTTCCTC 26226 30 96.7 30 .............................C GCAAAATTAGTGAGAACAAGACTGTTTATC 26166 30 100.0 30 .............................. GGGGTGACATACCCGCTAGACCATTTTTAC 26106 30 96.7 30 .............................A ACGTGGTCAAGCCGCCGAAGATTCCTGAGA 26046 30 96.7 30 .............................C TTACCGTTCCATCTCTTCCAATTGAGAATA 25986 30 93.3 30 ............................GA ATAAACATGACCAGCATCATAGCCATCAAC 25926 30 93.3 30 ............................GG CTTTGCAAAACCTCTTTTACAACGAGCTTT 25866 30 93.3 30 ............................CA GACATTACAGCCGCCCCAGTTGCTTCCACC 25806 30 96.7 30 ............................A. TAAGGGGCGATGCTTTATTGATCCAGCCAC 25746 30 93.3 30 ............................AC CGAAATGGTACCAAGTCTGAAAACCGCATA 25686 30 93.3 30 ............................AA TGACAACTGATCCACCGTTTTGCCAAGTTT 25626 30 96.7 30 .............................G TCCCTGCTGCAATCATTTCAAGAATCTTTT 25566 30 96.7 30 .............................C TGAGATGTACGCTAAACAATTCACGAATGC 25506 30 96.7 30 .............................G AATTTTACAAACTAAAGCTGGACGGAAAAT 25446 30 96.7 30 ............................A. CGATCTTAGCACCAAAATCGTAATATGTAG 25386 30 100.0 30 .............................. GAGCTCTCTCACAACTAAGCGAATTTAAAT 25326 30 100.0 30 .............................. CTGGAAAGCCTATTATGGATAGGATTATCG 25266 30 100.0 30 .............................. GAGCACGTTCACAGCTAAGCGAATTTAAAT 25206 30 100.0 30 .............................. GTGATTGGCGCGAATCTATTAACAAAGAAC 25146 30 96.7 30 .............................C TTGAAGTCGAGTATAGTTTTTAATCTTATG 25086 30 93.3 30 ............................CA CCAAAATGGAGGGGAGACTACCCCCGAAAA 25026 30 96.7 30 ............................A. AGAGTTTTCGAGAGTTCGATTAAGCACATA 24966 30 96.7 30 ............................A. GTGAACGGCCAAGCATAATAATCAGGCCAT 24906 30 96.7 30 .............................G TAAGTAATGGCGCACATCTTTTTTAGCTGA 24846 30 93.3 30 ............................AA AGCCTGAATTGATTGAATCGACGATCTGAT 24786 30 93.3 30 ............................AA CCATACCAAGCTGCAAACACAACCGCACAG 24726 30 93.3 30 ............................AC ACCAGTTACAACGTAATTACCATCCAAGAA 24666 30 93.3 30 ............................AC AAAAAGCTAAGTCTTTGGATGGGTGATGTT 24606 30 93.3 30 ............................CC GAAAATTTGTACCGCCGATGTTACACCAAT 24546 30 96.7 30 ............................A. GAAGCTAAGAAATGGGAACACCTGCAAGAT 24486 30 93.3 30 ............................AC GTAAAAGGACTTTACGGTTTGGGTCAGCTT 24426 30 96.7 30 .............................C TGGATGTGGCCAAAGCAATTTATCGCAAAA 24366 30 96.7 30 .............................G TCACAGATTCATAGTGCTTTATAGCTAAAG 24306 30 100.0 30 .............................. AAATTGTTTTGCATGAAGGTAGCTCGCATG 24246 30 96.7 30 ............................G. GAATATCTCCAACTGCATACAGCTTGCCTT 24186 30 93.3 30 ............................AA AACCATCCACAGGGTAACCATTAGCAATAC 24126 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 24066 30 100.0 30 .............................. CTGTTAGCTCTGCTGGATCATCAACGCCAT 24006 30 93.3 30 ............................GA ACTGAAACAGTAACCCTCAAATGTTTAAAT 23946 30 96.7 30 ............................A. TTTCAGCGAATGGTGTTGTAATTAGTGTTG 23886 30 100.0 30 .............................. TTGCAATCATGATCCGGACGATAAAAAAAT 23826 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 23766 30 96.7 30 ............................A. GACGAACCTGTCTTACCTTCAGATCCTTCT 23706 30 96.7 30 ............................A. ACACTCATCGCGATTCTATTAAAGTCTGTT 23646 30 100.0 30 .............................. CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 23586 30 93.3 30 ............................AA AATGAGAAATTCATAACCATATACCCCGAG 23526 30 96.7 30 .............................G AAGAGTTAATCAATATTATTTCTTGCTCTG 23466 30 96.7 30 .............................A TGAGAAAGAAAAAAATTGCGACAAAGATAA 23406 30 96.7 30 .............................A CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 23346 30 93.3 30 ............................AG CTAACTTACCACCGTTTGCAAATGTTTATA 23286 30 96.7 30 .............................A AAGATACGTTTTTAGCTTTTAATGTGATTT 23226 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 23166 30 96.7 30 ............................A. TAGCTAAACCTTCAATCTCGCCTTCAGCTA 23106 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 23045 30 96.7 30 ............................A. GTCCATTTTGCGGATACGCAGATGGGTTAG 22985 30 100.0 30 .............................. CCCCCTTGAGCGCTTCAACCATCGCCTTAA 22925 30 93.3 31 ............................AA ACTTAGATGACAAAGTATTAAAGCTCTGTGA 22864 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 22804 30 93.3 30 ............................AA TGGATGGATATGGCATAGGCAAAGACGGCA 22744 30 96.7 30 ............................A. AGAGAATCGGTACTGGATAACCTTGAGCGG 22684 30 96.7 30 ............................A. CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 22624 30 93.3 30 ............................AA ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 22564 30 100.0 30 .............................. GAGAATTATGAAAAAGCAGGCTTCTATGAA 22504 30 93.3 30 ............................AA CAGACATACTTCTTTCATTTGCATCGCCAG 22444 30 93.3 30 ............................GA GGCGTAAAGATGCGGTGTTGATCTTGCACG 22384 30 96.7 30 .............................A CGTAATAAGTACACGGTGCAATCGGTGCGT 22324 30 90.0 30 ........................A...AG AGTTTTAAACCCGCGCTACACCTTTCTAAA 22264 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 22203 30 93.3 30 ............................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 22143 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 22083 30 83.3 30 A.....AA.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 22023 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== ================================ ================== 121 30 95.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //