Array 1 108610-106140 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXU01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain BCW_2840 NODE_6_length_178719_cov_4.61799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108609 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 108548 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 108487 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 108426 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 108365 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 108304 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 108243 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 108182 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 108121 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 108060 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 107999 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 107938 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 107877 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 107816 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 107755 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 107694 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 107633 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 107572 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 107511 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 107450 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 107389 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 107328 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 107267 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 107206 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 107145 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 107084 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 107023 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 106962 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 106901 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 106840 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 106779 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 106718 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 106657 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 106596 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 106535 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 106474 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 106413 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 106352 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 106291 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106230 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106169 29 93.1 0 A...........T................ | A [106142] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126732-125117 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXU01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain BCW_2840 NODE_6_length_178719_cov_4.61799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126731 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 126670 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 126609 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 126548 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 126487 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 126426 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 126365 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 126304 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 126243 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 126182 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 126121 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 126060 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 125999 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 125938 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 125877 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 125816 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 125755 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 125694 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 125633 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 125571 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 125510 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 125449 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 125388 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 125327 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 125266 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 125205 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 125144 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //