Array 1 40623-36094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRII01000025.1 Acinetobacter baumannii strain AB-HZ-B04 bl_sm_4_ctg025_234323, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 40622 29 96.6 31 ............................C TAAACGTTTACCACTTGCAGTTGTTGTTACT 40562 29 96.6 31 ............................T ACAAGGCCAATTGGCGTGATTAAATCGCTTA 40502 29 96.6 31 ............................C AAAACACCCAACAAAGCGGTGCCGAGAACAT 40442 29 100.0 31 ............................. AGCAGAACAGGCCGCTAAAGCACTTGCGGAT 40382 29 96.6 31 ............................T CTTTACCATCAGCCGTTTTGCCTGACTTACC 40322 29 96.6 31 ............................T CGCTCGGAAATGGCAGACGCTTATACAATAT 40262 29 96.6 31 ............................G TGATTTTTGTGTTTGCTCTGATCGGTAAAGT 40202 29 100.0 31 ............................. GATGGCACTACCAGAGCTACTGATTTAGATC 40142 29 96.6 31 ............................T GAACGTCAGATCTTTGCTGACATCGAGGGGC 40082 29 96.6 31 ............................T TCAATTATTTATTCAAAAGATAACTGGTTCT 40022 29 100.0 31 ............................. ATAACGAAACCGATAGAAAGCTTTAATTTGA 39962 29 100.0 31 ............................. GCACGCCCATAATAAGAAAGGTAACCATTTC 39902 29 96.6 31 ............................T TACTTTCCGCTTTAGTGAACTTCACCTCTAC 39842 29 100.0 31 ............................. AGGGGGAAATTTAAGAGCGAGAAAAACAGAA 39782 29 96.6 31 ............................T AGTCGCCATGTTCAAGAATATCCAACTATTC 39722 29 100.0 31 ............................. ATCGATTTTGAGGGTTTGAAAATCCCAGTTC 39662 29 96.6 31 ............................T CTAAATACTTAGATGGATTGTTTAAATTACT 39602 29 96.6 31 ............................T TCATCCATTAAGATTAGCAAGCGTTTAGCTT 39542 29 96.6 31 ............................T GCAAGAAGTTTTACGAATGCACTGGCTTGTG 39482 29 96.6 31 ............................T TCGATACGAGCAGATTGCTCTGACCATACGC 39422 29 100.0 31 ............................. TAAGCCTGAAGATGAAAAGAGATCTATCATC 39362 29 100.0 31 ............................. GAACGGCGAAAAGATTTATTCACGTGTACGC 39302 29 100.0 31 ............................. AGTTGATGCTGGTTCAGATGCATTTAATGAA 39242 29 96.6 31 ............................C TTCCTGTTTATCTATGAAGTTAAAAATCCAA 39182 29 100.0 31 ............................. TTACGAATTGCCGGATACATAGAATCGCCTG 39122 29 100.0 31 ............................. ATATATAGATAGTAGTAGTAATGCGCGTGAA 39062 29 96.6 31 ............................T TAAGCAATTGCTCTTCAGTCATATTGAACTG 39002 29 96.6 31 ............................T AAAGAGCTGAATATCTTCAACTATGACGAGT 38942 29 100.0 31 ............................. ATAAGCCCGCCCGAAGGGAACGCCCAAAAAA 38882 29 96.6 31 ............................C AAAACAACTCAACAAGGCCCTAAAAATGCTT 38822 29 96.6 31 ............................T CCAGTAGATAATTACAAATCACCTGAACCTC 38762 29 100.0 31 ............................. GTACCTATTCTCTATGGACGTCGTGAAGTTG 38702 29 100.0 31 ............................. CCCGTTGGGATGGCTCTGTAACTTTCGGGAA 38642 29 96.6 31 ............................G AAGATACAAGGAATACCAGCGACTTTGAATT 38582 29 100.0 31 ............................. TTCGCGTAAGTAAAACAGATGTATTTTGGTA 38522 29 96.6 31 ............................C ATATCGTTGTCAATGCGGTGGCCTGCTGCTT 38462 29 100.0 31 ............................. TAACACGCTCTTGCATGTCTAGCATCTTTTC 38402 29 100.0 31 ............................. AACTAATCTTACTGATAAGCGCACAGTAGAT 38342 29 96.6 31 ............................T AAAAAAGATTATATTAAGTTTTATTTCAAAC 38282 29 96.6 31 ............................T AATTCTTGGGTGGTTCTGGTAGTGGCATCCA 38222 29 100.0 31 ............................. ATGTAAATTCCGTCACCTGTCATGTCTTCTA 38162 29 100.0 31 ............................. GTAACCAAAATTATCATTTTATAAACTCCAA 38102 29 96.6 31 ............................T CTCGAGAGCTAGCAGAGAACGAGTTTTTATT 38042 29 100.0 31 ............................. GTCTGGCAACTGCTGTGAAAAGTCGATTTCT 37982 29 100.0 31 ............................. ATCTGTTATCAAGCCTGGTAGCCAAGTTGCT 37922 29 96.6 31 ............................C TTGTAACATAAGCAAGAAGGCGAAACTAGAT 37862 29 96.6 31 ............................T AGACAAATTGATAGATCAAAGCATTGCGCGA 37802 29 100.0 31 ............................. ATGCAGCTTTTCGAAAAGTTCATTGTGTTCA 37742 29 96.6 31 ............................C GCAGATTTACGGATGCCTGTAACTGTCATAA 37682 29 96.6 31 ............................C TTAGTTGTGGCGGCGCGTCAATTGGCTCGTA 37622 29 100.0 31 ............................. TTTTCGGTAAACGGCGCTGCTAACGCCGTTC 37562 29 96.6 31 ............................G CTTTGGTACGGTTATTTGTGCAAAGGATGAA 37502 29 100.0 31 ............................. GTTGCATGGGGTATAAAAGTTACATCTAGGC 37442 29 100.0 31 ............................. ATTAGGCACAAGACAGGAATCGGAAGCCCTA 37382 29 100.0 31 ............................. AACAGCTCGACGCGCAATATGAGTTACATGC 37322 29 100.0 31 ............................. AATTGGTATGAAGAGCCAGTTTCGCAGTTCA 37262 29 96.6 31 ............................T AAGCCTAAATTTCCGTTTGCTCCGGCAGACA 37202 29 96.6 31 ............................T TTGATGCGGCACCTGAGTCAGAATTACTGGT 37142 29 100.0 31 ............................. CAACTGGCTCGACATGTTGATCAATCATATC 37082 29 96.6 31 ............................T AGCACATTAAATATAGTTTTTGATAATCAAT 37022 29 96.6 31 ............................T TCAGGGATTTCAAAAGCTAAGCCGGTTCCAA 36962 29 100.0 31 ............................. GATGTCGTAGAAATTCTTTTGAATCCTGATC 36902 29 100.0 31 ............................. GCATAGTGAGCTATTGCAGCCGCTTTAGAGT 36842 29 96.6 31 ............................T GCAAATAATCGCGTAAAATATTATCCGGACC 36782 29 100.0 31 ............................. ATTGGAGTAATTAAATCGCCTAGATCAGAAG 36722 29 100.0 31 ............................. CAGTATCACTGGCACGATTTATGTAATTAAA 36662 29 100.0 31 ............................. TCTGCTGTAGTCGTACTAACCACGCTACCGT 36602 29 100.0 31 ............................. ATATTGTTATTCAATCACCGTAATAAGAAGG 36542 29 96.6 31 ............................T ATCAATTAGGCACAAGAGAAGAATCGGAAGT 36482 29 96.6 31 ............................T TATCCTGGTAAAACAAGCCCATATCTTGAAC 36422 29 100.0 31 ............................. ATTGGAGTAATTAAATCGCCTAGATCAGAAG 36362 29 96.6 31 ............................T GAATTCTCTCATCTGGCAAAGACATTAAACT 36302 29 96.6 31 ............................C TGATTTATACCACGTTTACGCACTTTAGCTT 36242 29 96.6 31 ............................T TGAATCGTGGAAATTAATAACACCATGTAAA 36182 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTGTTG 36122 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 76 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGATACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAATAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGAACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46175-47104 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRII01000025.1 Acinetobacter baumannii strain AB-HZ-B04 bl_sm_4_ctg025_234323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46175 28 92.9 32 ...C........T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT A,A [46177,46181] 46237 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 46297 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 46357 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 46417 28 96.4 32 ...A........................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 46477 28 100.0 32 ............................ ATCAAAAGCTTGGTGAAGAGCATGGTGCACTA 46537 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 46597 28 96.4 32 ...A........................ AGAACAGTTTATTCGCGAATTCGGGGTGGAGA 46657 28 96.4 33 ...A........................ CAACCGGCTAAGCTGCATGTTCTTGAGGCGCTG 46718 28 100.0 32 ............................ GATAACGAACACACGGCGGCGTCGTTGTGGAA 46778 28 100.0 32 ............................ ATACAGGACGGCTGGCAAGTGGACGGGCATGA 46838 28 100.0 32 ............................ AGTGGGATTGTTGCAAAAAGGATTCGCTTTCT 46898 28 100.0 32 ............................ ACGAAACTAAGCGGCTCATTACCGGCGATAAC 46958 28 100.0 32 ............................ TTGATAATACGACCTATGAAATGATTGGTACT 47018 28 100.0 31 ............................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 47077 27 78.6 0 A..T........TC........C.-... | A [47081] ========== ====== ====== ====== ============================ ================================= ================== 16 28 95.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TCTTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTATTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCATTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTAT # Right flank : ATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCAGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGGGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //