Array 1 367059-368428 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAJ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3478 NODE_1_length_442656_cov_84.629883, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 367059 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 367120 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 367181 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 367242 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 367303 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 367364 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 367425 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 367486 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 367547 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 367608 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 367669 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 367730 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 367791 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 367852 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 367913 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 367974 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 368035 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 368096 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 368157 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 368218 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 368279 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 368340 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 368401 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 384561-385732 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAJ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3478 NODE_1_length_442656_cov_84.629883, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 384561 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 384622 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 384684 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 384745 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 384806 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 384867 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 384928 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 384989 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 385051 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 385112 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [385154] 385154 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 385215 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 385276 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 385337 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 385398 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 385459 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 385520 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 385581 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 385642 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 385703 29 96.6 0 A............................ | A [385729] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //