Array 1 2570-1282 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASRD01000188.1 Pseudomonas aeruginosa str. C 1426 contig188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2569 28 100.0 32 ............................ ATCAGTCGATCCGATCCAGCGTGCCGTTGAGC 2509 28 100.0 32 ............................ TGCCACCCTGTCCGCCGTCGCAGTATCCGTAC 2449 28 100.0 32 ............................ ATGTCCCAGAGCTTGCCAAGCTGCTGGGCCGC 2389 28 100.0 32 ............................ TCGTCGTTGATGCTTTTCAATATCTTTGATGC 2329 28 100.0 32 ............................ GATCGACCTGGTGCATACGCTCCGCCTCGATG 2269 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 2209 28 100.0 32 ............................ TCTGCGGACGCCAGGCGCCCGGCCAACACGCC 2149 28 100.0 32 ............................ AGCACCAGGACCGAACCAGGCGGCGCAAAGTC 2089 28 100.0 32 ............................ CGTCCTGGACTACGAGCACCAGACCCTAAAGA 2029 28 100.0 32 ............................ TCGACAAATATCCTGCAAAGCGAATCAGCCGT 1969 28 100.0 32 ............................ ACAACAGCCGTTCGTCGGAGTTGACCATGCGT 1909 28 100.0 32 ............................ TCGGATTGGAGCGAGTTGGAGAAGCTACAGAC 1849 28 100.0 32 ............................ TCTCCGCCCCAGCTATTGCCGGGGAGGGCATG 1789 28 100.0 32 ............................ ATAAAGCACTTCCACGCCGCGCTTGATGCTCT 1729 28 100.0 32 ............................ ACCGCCGGCCAGCACACCCCTTGGTCGTTCGC 1669 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 1609 28 100.0 32 ............................ AATATGAACATTAGGTACATATCAGGCGGGAA 1549 28 100.0 32 ............................ TTCACGTTGGGCGTAGGACAGCGCGTCCTGCC 1489 28 100.0 32 ............................ AACAGCATGGCGTCCACCCGTACCGCCCTCAT 1429 28 100.0 32 ............................ TACCGTGGCGACGTTGCAACCCGCTGGTCCGA 1369 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 1309 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37490-37877 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASRD01000094.1 Pseudomonas aeruginosa str. C 1426 contig094, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37490 28 100.0 32 ............................ GCTGGCCGAGACCGACAAGTCGAAGCGCACGG 37550 28 100.0 32 ............................ TGTTCGTAGCCGATATCGCTGCACGCGATGCA 37610 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 37670 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 37730 28 100.0 32 ............................ AAGGAGCACCACGACATGGTCAGAGCAAACCC 37790 28 100.0 32 ............................ TCCTAGTTCTTCGCCAAGCCGGAAACCGAGGC 37850 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : GTAGGAACGCCATCCACTCGAGGTCATGGCGCGTTCACTGTGTAGTGGTCTACTGATCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //