Array 1 44846-46215 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFU01000026.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2178 NODE_26_length_73142_cov_4.08391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44846 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 44907 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 44968 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 45029 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 45090 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 45151 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 45212 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 45273 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 45334 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 45395 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 45456 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 45517 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 45578 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 45639 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 45700 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 45761 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 45822 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 45883 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 45944 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 46005 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 46066 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 46127 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 46188 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62475-63176 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFU01000026.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2178 NODE_26_length_73142_cov_4.08391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62475 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 62537 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 62598 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 62659 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 62720 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 62781 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 62842 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 62903 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 62964 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 63025 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 63086 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 63147 29 96.6 0 ............T................ | A [63174] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //