Array 1 116221-116613 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSIF01000023.1 Actinophytocola xinjiangensis strain CGMCC 4.4663 contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116221 29 100.0 32 ............................. GAATGTCCGCTGACAGCGACATCCCACCAGGC 116282 29 100.0 32 ............................. GACTGCGTGGTGTGCCACAGCCTGTGGATGAC 116343 29 100.0 32 ............................. CGCCATGTACCTCGGAACCCCCCTCCATCCCG 116404 29 96.6 32 ............................G ACCGAGACGCTCAAGCAGATGGCGCTGGCGAT 116465 29 93.1 32 ......T.....................G GACAGCACCACTCGGCCGGTCGTCGAGGCCGC 116526 29 93.1 31 ..T.........................T GCGGGGTGCCGTTGACGAGGGCCCGGAGGTG T [116551] 116587 27 79.3 0 ..A.......-...-.G.........G.G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTCGTCCCCGCGCGAGCGGGGCTGGTCCC # Left flank : CCGGTTGCGTTCGCGTTCGATCAGCCCTGCTGACCCTGTTGACCAGCCCAAACGACTGTCATCGACCGTCATTCGCCGTCCCCGGCCGATCCGTGCCTGATTCGTCCTTGCCCCTCAGGTCTCGGGGATCCCCCCGATTTCCAGTCTAGTCGACTCGAACGGCGGGTTAGGCCAGTCGGCCGTGTCCTGTGGACAACTTCGGTCACGAGCGGATCCCGTCAGCGCTCGGGTCAACTCCCACGCATCGCGCTCGCTGTGCGGAGGTCACTATGCGCAACGCCGCCCCGGGCGCCAGGACCCTCAAGGTCATCCGCACAGAGCGTATGCCCGACCGCCATGAGCGGCATCCACCGGTCACGGCGCTGGCAGCCACTCCAATGACAAGCCCGACCGCCCACTGAACGACGACCGATGTCCCAGTGCAATTCAACATCCGAAGAGAAGATGTGAAAGTGAAGCTGAAACGGGGATTGAGGCCGTATCATCGCAGTTCAGGAAGT # Right flank : GGCCAGCTCTGGAAACAGGCAATCAGCCGATCCTGCCCACAGGTCTCCCGGCCGCCACGCAGGAGTGACCATCGGCCGGAGCGTCAGGGACATGAGGCCGAATGCCGTCAGATCAGGATCCGGGCATGTGCCACAGCCTGAGCATCCGGCGACCGATCCCGCCCAGCCACGGTCAGCGCCGGGCGGCGTCCAGGTGGTTTCGGGCGGCGGCCTCCAGGTGGGCGATGTCCGAGGCGATCGACGCGAACGTGAAGCCTTCGGCCAGTCGGCGGGCGGCTGTTTCGCCGTTCGGGGTGTGGATGCCGGCGGCGATGCCGGCGTTGGCGGCGGCCTCGCGGACGGTGGTCACGGCCTGTTCGAACTTGTCGCTGATGGCTGGGTCCAGGGGGAACGCGCCGCCGACGGCCAGGCTCAGGTCCGACGGTCCCACATAGACACCGTCGAGGCCCGGTGTCGCGCAGATGGCGTCCACTTCGGACAGGGCGCCGGGGGTCTCGATC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGCTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119694-119298 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSIF01000023.1 Actinophytocola xinjiangensis strain CGMCC 4.4663 contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119693 29 93.1 32 ........................A...G TTCCAGTGCTCCTCATCCGGCGCGTCCGCGTG 119632 29 100.0 32 ............................. AACGGTGGCCTACATTGGTGGCATAGCAACGG 119571 29 100.0 32 ............................. TCCCAGAACGTGTCCGTCATCCGCTTGTGCCG 119510 29 96.6 32 ............................G ATGTGGTCGTGGTCGAACGCCAGACCCTGGAG 119449 29 100.0 32 ............................. CCGGCCCTCGCGGCACTCCGCGGGATCCGGCT 119388 29 100.0 32 ............................. GCCTCGCCCAGGCTGCTCTGGAACGCGATCTT 119327 29 96.6 0 ................T............ | T [119322] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTCGTCCCCGCGCGAGCGGGGCTGGTCCC # Left flank : GCCCATCCTCGGAGCCCCACCCGACCGACGACATCACCGTGACCTACGACGATCCGCGCGCCCGCTGGGTACGAGCGATCAACCTGGTGCGCCAACTACAGGAATGCACCCTCATCGACCCAGCAGACCTATGCCGAAACTGAACCGTGATCTCATCCGCGCGTGGCTGGAGGACAACAACTGGACCGTGGCCCGCCTCACCAGGGAATGTAACACCCTCACCGAGGACACCATCGCCGAAGGCACGATGCGCAACGTCACCAACGGCATCGACCCCATGCGACCGGGCCGGATCAAGGTCATCTGCAGAGTACTGGCCAAGTACGGAAACGGCCTACCGTACGAACAACTGATCCAACGACCCACCGAGGCACGACCAGCCACGCGCCACTGTGAACCCGCCACCCCAGCCGATTCCGAAGCAATTCAACACCCGAGGAAAAGTTGACAAAGTGAAGCCAGAACGGCAATTGAGGCCGTATCATCGCAGCTCAACAAGT # Right flank : GAAAGGGGGCCGCGCAATCACGACCGCACACCCTCTCGGCGGTGCGGCTGGGTCACGAGTAGCGGGTGTTCTCCAGCAGGACGGTGATCAGGTCGCTCCGGCCGGCGAGGGTCTCGGGGTGGGTGGGGCCGAGGCACTGGCGCCGGCGGTGGACGACCTCCCGTAACTCCGTGGCGGCCTCGCGGAAGCGGCCCATGCCCATCAGCACCGCGGCGAGGTTGTGGCGGCTGATCAACGTGTCCGGGTGTTCGGGGCCCAGCACGCGCACGCACGCGGCCAGCTCCTCGCGGCTGGCCGCCAGGGCCTCGTCCTGGCGGCCCAGGTTGTTGAGGACCCGCGCGACGTTGTCGCGGCTGGTCAGGGTGTCGGGGTGTTCTCGGCCGAACAGTCGCGCGCGCACGGACAGGACGCCTCGGTGTTCGGTCAGCGCGGCCTCGTAGCGGCCCAGCGAGTTGAGGACGTTGCCGACGTTCGTGCGGGTGACGAGGGTGTCGGGGTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGCTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95592-95326 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSIF01000010.1 Actinophytocola xinjiangensis strain CGMCC 4.4663 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95591 29 93.1 31 ..........................C.T GGACGGAGAGCAGCCTCCACCGTCTGCCGAA 95531 29 96.6 32 ..........................C.. ACCCCGATCCACACCCGCTACGTCGGGGTGTG 95470 29 100.0 32 ............................. ACGAGGTCCGTGGCTACGGCAACGCGGTCCCA 95409 29 82.8 26 ............T.........C.CC..T CCGTCGATCTCTCGGGTCGCGGCGGT T [95386] 95353 28 82.8 0 ........-...T........T.....TG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.1 30 GTCGTCCCCGCGCGAGCGGGGCTGGTTCC # Left flank : CGTGCTGGTCCACAACAACGTGGAGATCGACAGCCAGACCGGGGCGGGACAACCGGAGAACCCCGCGCCGGGCGCGATCCGGTTGCAGGACCACGGTGATCCGGGTGAGAACCCGAGATTCCGCAACATCTGGATCGAGCGGCTGTAGGTGACCGGTGGCAGGGCCCGGCCGCGTGGCCGGGCCCTGTCGCGCTTCGCTTCGTCCCGCCGCGCGATCGGTCGACAGTGGGTGGGGCGGTGGGGAGTTGGCGTATCCGAGCCGTGCCGGGGTCGGTTCCGGCCTTGACCCGGGTGGTCCGTTCGGTTGCCAGCGAGTCCGGTTACTGGCTTCGCTCGGCGGGGCGGCGAATCCTGTCGCCGGTCAGCCTGATGTCCTTGCGCCGTTCGGGTTGACCTGGACGGCGATTGTTGGGACACAAACACAATTCAACTAGCGAAGAAAAAAGACAGAAGTGAAGCTGAATTGGGAGAAACCGGGATATCATCCCAGCTCAGCAAGT # Right flank : TGTGGGTTCGGGTGAGGTGGCGTTGACGATGTGACAAGGCCGGTCAGGGGTGGCAGATGCGGTGGATGAGGTTCTGCCAGCCGGTGGTGAGGCGTTGTTCCGTTGGGCAGGTGGTGGCGTCCAGTTCGGACTTCGACAGGTACAGCAGCAGCGGCCCGTCCAGTGCGGCGGTGAGTTGGATGGCGAGCAGGTCGAGGTCGACCGGGCCGAGGTCCAGTTGGGTGAGGAGCATTCGGATGTGGATCCGGGAGAGTGGTGTCGCGGACCCCGCCGGCGCCGGTTGGCGTCCGTCGAGGGCGGCGCGGGCGATGTCGTGGTGTTCCAGGAGGAAACGGATCCGGGCCTGGCCGTAGGCGATCAGACGCTCACGCGGCGAAGCACCGGGGCCCAGCGGCGGCGGGCCGGACAGCACCCCTTCCTGAAAGGCGCGTTCGTTGTCGTCCAGGAGGGCCTGGAAGATGCCTGACCTTGTGCCGAAGTGGCGGAACACCGTGCCTTTG # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:-0.06, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGCTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGCTGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 103170-102462 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSIF01000010.1 Actinophytocola xinjiangensis strain CGMCC 4.4663 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 103169 29 100.0 32 ............................. TTATCGCCGTCCACGTAGTCGACAACGAAGCA 103108 29 96.6 32 ............................G CGGGCTCCCCAGAGGAGCACCGGCGAGAGCGC 103047 29 100.0 38 ............................. CCAACGGCCGGTTCGTCCGGTTACCGAACTCACTCGGG 102980 29 96.6 32 ............................G GACGGCGCCCCCGGCGTGCGGTACGTCGAGCA 102919 29 96.6 32 ............................G TCGCCGAACTGGGCCGTGGCGGTGTCCAGGTC 102858 29 96.6 33 ............................A TGGACAATCCACCAGTTCGGCGCGAACCGCACC 102796 29 100.0 32 ............................. GCGCCCTTGGCGTACACCTTCACGTCGGTGTG 102735 29 100.0 32 ............................. GTCCTGTCCGACGGCGTCATGCCGGCGCTCGG 102674 29 100.0 32 ............................. TGCACGGTGTCGATCACGTTCCACGGGCCGTC 102613 29 100.0 32 ............................. CGGCTTATCGCTGTCAATCCATGCGACGGCGT 102552 29 93.1 31 ............T...............A AGGTCGTGCCCGCCCAGGGCGATCCGATGCT 102492 29 96.6 0 .................C........... | C,A [102469,102472] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.0 33 GTCGTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : CCATGCCGGGGTCCACCCGAAACCCGTCACCAGCCATCGCCTGACACAGCGTCGGCACCTGAACAGCGAACGCCGGACTCGCCTTCCCGACGTCATGCACAGCGGCCAGCCACACCACCAGGTCACGAACATCGGCCCCGGAGATCCCGGCATCCTCGGCGATCGTGCGCACCACCGGGCCGGGAACCCAGTCGTCGAACAACAACCCCGCCACGCCCTGCGCATCGTCAAGATGCTGGTGGAGCGGCAACCACTGCTCCACCTCCGCCGGCGAATGAGGCCACGACTTCGCCCACACCGACCACCACGAACCCACGCCACCCCCAGTGTTCATGCCCTGACATCGACGACCCGGCCCCCACCGTTCCAACAGCCCAACAGACTCACGATGATGTCGCCGTAGCAGTGAACATGGAGAGCAGCGATTCATCAGCCGATGAAAAAATCGGAAAGTGATGCAAAAACGGCCACACCGCCGATATCATCGCAGGTCAACAAGT # Right flank : GACACCGCGACGCCGACGGTTCGGCCACCGTGTCGTACCGCATGCACGGGGTCTGTTGACGACTTGAGGGTTGCGGCAGGCTGGACGTGCGGGTCCTGGTCAGGCCGTCGTGGGGACGGCCTGACCAGGTGGGTGATCCGGGTCGGTCACCAGGTCATGATCGCGGCGATCAGGGTGGCCAGCGGAACCTCAAGGCGACCGCCGTCGGGGTTCTTGCTGTCGCGGATCGCGCCGGACGTGGCGGTGTGCGCCAGTTCGACACAGGCTCCTTCGTTGCCGCTGCGGCTGCTCTTGCGCCAGGCCAGCTCGACACAGTTGCTTTCGTTGCCGCTGCGGCTGCTCTTGCGCCACCGGCCGAACGTTGCCTCCGCCATGATCGTTTCACTCTCCGTCCAGATCACCCGCGATGGACCGCAGCAGGCGCACCGAGCGCCCTTCGTCCAGCGCGAGACCCGTCAGCTTCTCCGAGGTCAGCTTATAGAGCGAGACCTTGTCCGGAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 106238-106450 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSIF01000010.1 Actinophytocola xinjiangensis strain CGMCC 4.4663 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 106238 28 96.4 33 ...........A................ CCACCCAGCGAAGGTGAGCGGGGCGCCAGACAC 106299 28 100.0 34 ............................ CGTGCGCGAGGTGACTGTGCCGCGTCGCCAGCCT 106361 28 100.0 33 ............................ GACCTGTCGGACATGCTCGCTGGCATCGGCCGC 106422 28 96.4 0 ...........................G | T [106446] ========== ====== ====== ====== ============================ ================================== ================== 4 28 98.2 34 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : TGGACTGCGCACGCCGGACTGGGTACCCGGCGGCGGCCAGCAGATTCCCCTGCTGGGAGAACTGGAATGGCGACTGGCACGGATTCTCGCCTCGTGCACCCTACGTCTGCCCCGCGCGTTGAGCCACGAAGGCGTGATCGACGCCGTGATCGATGAACTGGTACAGACGAAGATCGACAGTTTCCAGCAGACCCCCACCCTGTCCGGCCACCTCATCCTCCCGCTCGACGATGACCGCCACGCCGTGCTCCACGACCACCACCTCACCTACGACCTCGCATGCGGCCTCCTCCACGAACCGGTCGACGGCTCCCGCTGAGCCCTGTTCGTTCTCTCGCCGCCGTGCGTGGGGTGGAGCGCCGCGAGGCTGGGGCATGGGATGGTTGGGGTGCCGCACGTGGAACCAGGACCGCAGCGGGCGGTAATTCAACTGCCAGGGAAAAGATGAGAAAGTGATGCTGGAATCGGAGTTCCAGTGCTATCGCCCCAGGTCAGGAAGT # Right flank : GCCCGGTGCGGTTCCGGGGTGTGCGGCCTGTGGGACAACTGCGGGGCTGGGGCGGATCGGCTTCTGGCGGCTGAGTGTGCGGTGGGGCCGTCAGGGCTGGCGAGATTGCCGCTGAGTTGGCCGGGGCGGGGCTCGCGTCCGAACCCGGTCAACTCAGCGAACATTCGTCGCGGTTCAGTGAAACGAAAGGCTACGGCCGGTCGATGACGTTCACGTGAGATGACGTCGATGTCGTCGTTAATATTCACCGACAGGTCAGACCTTCGAGAACTCTGTGGATGCTGATGTGAGGCTTTCTGTATGAGTGGGTTCGACCTGGTCGTGCGGCCGTGGTTGTTGGCGCGGGATCAGGACGGCGATGTCGTCGAACTGTCGATGGGTGAGATCTTTGGGTCCGCTCATCGGTTGTTGGGGCTGGTCGGGGACGTGCCGACACAGGTTTTCGCGCTGACGCGGTTGCTGTTGGCCGTGCTGCACCGGTCGGTTGGCGGGCCTCGGGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 173698-173304 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSIF01000010.1 Actinophytocola xinjiangensis strain CGMCC 4.4663 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173697 29 93.1 32 ..............C.........A.... TCCCCCGGGAGCACAGCTCCACCAGCTGCTAC 173636 29 93.1 33 ..............C.........A.... TTGAACGTGGGCAGGGCCTGGTCGGCGCGGACC 173574 27 89.7 32 .............--.........A.... ACCGTGGGTTTCTACACCGCCAGTTCCGGTGG 173515 29 100.0 30 ............................. CAGCGGGCAGCGCACGATCAGGGACGCCTC 173455 29 96.6 32 ........T.................... CCGTCCGCGCAGGGCAGTTCCCATGTCGGGAT 173394 29 100.0 32 ............................. GCCACGCGCACCGGTCGAAACCAACCGTCCAC 173333 29 96.6 0 ............T................ | T [173306] ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.6 32 GTCGTCCCCGCGCGAGCGGGGCTGGTCCC # Left flank : GCGCTGCAACGGGTGACGACCGCCCCCGTCGAACTGGGTGGAGTGACGATCCCGGCCGGCGAACTGGTGATCATGTCGTTGGCGTCGGCGAACCGGGACACCGAGCAGTTCCCGGTGTGCCCCCACGAACTGGACCTGGACCGACCCCGGGCCCAGCACGTGAGCTGGGGGTACGGGATCCACCGGTGCCTCGGATCGCACCTGGCCAAGGCCCAGGCGGAAATCGCGATCTCCAAGCTGTTCACCCGCTTCCCGACACTACGGTTGGCGATCCCGGCGGAACAGCTGCGGCACGCACCAGGCATCAGCGTGCGCCCCCTGGTCTCCGTCCCGGTCGAAATCTGACACTGCCCGCGACGGCCCCGCTCACACCTGGATGCGGCGCTCAGCGCTGGACCGGTTCCCTCAACTGACCGAGCCCACCATTCAACACCCGAGGAAAAGATGTGAAAGTGATGCTGGAATGGTCGGTACCGCCGTATCATCCCAGCTCAGAAAGC # Right flank : GGTACGCGGTCGGCGGGGTCACGCCTACCTGGGCGTGCCTCGCAGGGGGCGGAAGAAGGCGCGGAGGTCCTCGACCAGTAGCTCGGGAGCCTCGACCGCCGCGAAGTGGCCGCCTCGGGGGAGGTTGGTCCAGCGTTGGACGTTGTAGAGGCGTTCGGCCCATTCGCGGGGTGGGCGGAACATCTCGGCGGGGAAGTTGGCGAAGGCGGTGGGGGTTTCGATGCGGGGGTAGCGCATGTTCTCCCGTTCCCCCTCGTAGTACAGGCGCATCGACGAGTTCACGGTGCCGGTCACCCAGTAGATCATCAGGTTGGTGAGGAGTTCGTCCTTGGTGAACGCCTTGTCCAGGCCGCCGTCGCTGTAGGCGTGGAAGCCCTGGAGGATCCAGGCGGCCAGGCCGGCCGGGGAGTCGTTGAGGCCTACCGCCAGGGACTGGGGTTTGGTGTTCTGCACCGCCAGGTACGCGCCTTCGGTCGCCTGCCACTGCTGCAACGTCGCCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGCTGGTCCC # Alternate repeat : GTCGTCCCCGCGCGCGCGGGGCTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25707-26636 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSIF01000039.1 Actinophytocola xinjiangensis strain CGMCC 4.4663 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 25707 37 100.0 37 ..................................... CTCGGACTGCGGACGCTGCTGGTCGACGCCGACAAGG 25781 37 100.0 38 ..................................... ATCGGGCCGTTCACCGCCATGACCGTCATCTCGCTGTT 25856 37 100.0 37 ..................................... CTCGGACTGCGGACGCTGCTGGTCGACGCCGACAAGG 25930 37 100.0 38 ..................................... ATCGGGCCGTTCACCGCCATGACCGTCATCTCGCTGTT 26005 37 100.0 37 ..................................... CTCGGACTGCGGACGCTGCTGGTCGACGCCGACAAGG 26079 37 100.0 39 ..................................... GAAGAAGATTTCGTCCTCTTCGGACCAGTCCTCATCGTC 26155 37 100.0 37 ..................................... ACATCACGCGGATGGACCGCATATAGCATCTGACCTG 26229 37 97.3 37 ..........T.......................... AAGCGCGTGGCGGCCTCCGGGAAGGTGGCGGAGCTTC 26303 37 97.3 34 ..........T.......................... ACCAGGCTGACCCCCGCAGCCAACGGGGAGTACC 26374 36 97.3 40 ..........-.......................... CGCAAGGACAACAGCCTCAAGTGCAACATGGACGATCACC 26450 37 97.3 37 ......................A.............. ATCGCCTTGGCCGCAGCCGCTGACGGTGAAGCCAGGG 26524 37 100.0 38 ..................................... ACACGCGAGAGCAAGGGCGGGGGCGGCAGCATCGCGAC 26599 36 78.4 0 .............AG.A...........TT..-..TT | C,C [26625,26628] ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 97.5 38 GCTGCGCCGGCCCTCCGGGACCGGCGAGGATCGCAAC # Left flank : GGCGGGAGAGTCGCTCCTACCTGCGTCAGGGGGATACTGTCCGATACGCGGACGCACGGCGCGGATTACCGCACACCGACTTGAAAACAGGAGACCTTCACGGGTCCGGGGGTTCAAATCCCTCCGCCTCCGCATAGCCTGACCAGCAATAACGCCCTCGGTGGGCGTTCGTGTCAGCGCAGGTGTCGTTGGCGGGGTCTCATTCAGGGTCTCATTTGAGTGGCCATGTCCGGTCGTCGAGCGTCATCGGGCTCGGTCTTCGATGAGGTGGCGACTCGGCGAAACCCGGGTGCCCGTTCGCATCCTGTGGGCCGTTGGTCGGCCGTCGCTGGTTCTCCGGGTGCGGTGCTAAAGATGATCTAGGAACCCCAAGTGGTCACGCGACACGCCATAGGTTCTCAACCGCGACACGCCGTTGTTGACGTAAGCACCAGGGCTTTCCATGCGATACAAAACCAAACAGGCATGCGACAGACTGTGATAGTCGCAGTTCAAGAACC # Right flank : TAGACGAGCCAAATACGGGTGTCGCGACTTCGAGGGCGCCTTAGCCGCCGGAGTTGTTCAGTGGCCCCATAAAAGGGTGTTGAGTTGTGCGGCGACGTTCACCTGGATTGTGCTGATGACGTGTAGGTAGCGCTTGGCGACCTTCGCGTTGGACCAGCCCATGATTTCCATGACGACGGGGAGTGGTACGCCGAGGATGAGGAGGACGGTCGCGGCTGTGTGGCGGGCGTCGTGGAGGCGGGCGTCTCGGACGCCGGCGGCGGTGAGGAGTGCTTTCCATTCGTTGTGGTCGGAGCGTGGGTCGATGGGTTTGCCGTTCGGCTGGGTGAACATGAAGTCGTTCTCTATCCACGCGTCTCCGGCGAGTTCGCGTTCGGCGGCTTGGGTTTTCTCGTGGTCCATGAGGAGGTCGAAGAGTTGGTCGGGGAGTCGGACGCCGCGTCGGCCGGCTTGGGACTTCACGTCGACGTCGACCATGCCGCCGATGCGCTCCGGGCAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCGGCCCTCCGGGACCGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.60,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32122-31667 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSIF01000014.1 Actinophytocola xinjiangensis strain CGMCC 4.4663 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32121 28 100.0 33 ............................ GGCGGCGGGCGTGACCATCTCCCCCGCGACGGC 32060 28 100.0 33 ............................ CAGCGCCGCCTCCTCGGGCGTCAGCTCCCGGCC 31999 28 100.0 33 ............................ GTAGTGGTGCTCCCCGCCGCTCTGGGTGCGCAC 31938 28 100.0 33 ............................ GTGCTCGCCGAGCGGCGTCGACAAGACGAGACG 31877 28 96.4 33 .................A.......... CGATCAGGGCATCGCGTGGGGCTACCTGATCCA 31816 28 100.0 33 ............................ TCCGGGCGACCACGTCGAGATCGGCGCGCGGTT 31755 28 96.4 33 ..........................T. GCTGGTGCGGGCAAGGGGTTGGGTGATGGCGGC 31694 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.6 33 GTCGTCCCCGCGAGCGCGGGGCTGGTCC # Left flank : ACATCGACACTCACCTGAGCGCGATCAGCGAGTCCCTGTTGGGTGAACAACTTGCCGCGCCGCTTCGCGATGCGTTTGCCAACGCTGTCGTCCATTGGATCACCTTCTTCGCGGATACCCTCCCCGCGTGTCCCCGACCCGTCGGCCGGGGGCGTTCCTCCACGAAGAGGTACACACACCGAGAGTACCTTCGTGCCCACCAGGTGCTGTCGAAAGGCAAGTCGCGCAGAACGGATCCCGTCGCAGCTCGTGAGCGGTTGACATGTGGCCGCGTGGCCGCAGCATCTCAGCGATCAGGCCGCACCTGACGGACGCACTCGAACGCCAGACGACTTTCCCGCACCGGACTCTCTGAACCACCACAAACGCGCGCAATGACCGATAGCGTCAAGCCCAGACCAACGTCACACCACATCCCACCACAATTCAACGGAACTGGAAAAAGCCGAAAAGTGAATGAGAAACGGCACCACCGCGAGCATCGTCCCTGCTCAGGAAGT # Right flank : GATCGGCACCGTTTCCGGAGGTTCGGGTGAAGATCGCGCTCGTGCTCGCCGAATTAGGTCGCCAGCTGGAAGCCACCGAATCGGGTGCGGTACCGCACAGAAACGAGTGACCAACTGAGTGACAATCGGCGCATTCAACCCGGCACAACCTTGGACGCCCACGGACGCACGATGGCCCCTGAACAGCACATTTATGCCGATCAGGGGCAGCATGGCTTGCATTCGGGACGAAGAGGTCGCAGGTTCAAATCCTGTCACCCCGACCAGGTCAGAGGCCGTCCATTTCGGAATGGACGGCCTCCGCCATGTTCAGGAGTGATCAAGCAATCCGGGTCGGCAGGATGCGATCTATCGCCGTCGCTCCGTCCACCGTGAGGGTTGAGCCGGTGCCGTAGATGGTCTCCGTCACGGCGGTGCCGCCGCGGCCGACAAGGCGCGAAATCTGCTCGATGGGCAGCCCACCGTCCGAGAGCAACGACGCAAAGCCGTGACGAAGCCCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGAGCGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGAGCGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //