Array 1 2637446-2639792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014985.1 Lacticaseibacillus paracasei strain IIA chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2637446 36 100.0 31 .................................... TAGAGAGCATTAATTATACCCACCAGAGTAG 2637513 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 2637579 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 2637645 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 2637711 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 2637777 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 2637843 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 2637909 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 2637975 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 2638041 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 2638107 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 2638173 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 2638239 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 2638305 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 2638371 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 2638437 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 2638503 36 100.0 30 .................................... GCAATTTAATTTATAACCCAAGTTTATCAC 2638569 36 100.0 30 .................................... GAGTTTTAAGGTGATCAGAATGTATCGAGA 2638635 36 100.0 30 .................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 2638701 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 2638767 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 2638833 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 2638899 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 2638965 36 100.0 30 .................................... AAGGTGAGCAACTCTTTGATGTTAGTCAGC 2639031 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 2639097 36 100.0 30 .................................... GAGATTGTGGGCTGACGATAGATATACGCT 2639163 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 2639229 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 2639295 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 2639361 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 2639427 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 2639493 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 2639559 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 2639625 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 2639691 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 2639757 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : GCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACGG # Right flank : CAAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //