Array 1 163946-162405 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFD01000027.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44695 N44695_contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163945 28 96.6 32 -............................ CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163885 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163818 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163757 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163696 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163635 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 163574 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163513 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163452 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163391 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163330 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 163269 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 163208 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 163147 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 163086 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 163025 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162964 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162861 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162800 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162739 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162678 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162617 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162556 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162495 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162434 29 96.6 0 A............................ | A [162407] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.3 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 321-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFD01000031.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44695 N44695_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 259 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 198 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 137 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GGCGAGGTCAATAAAAAATGGTGTGGCTTTACCGTGTTCCCCGCGCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-564 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFD01000081.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44695 N44695_contig_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 112 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 173 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 234 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 295 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 356 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 417 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 478 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 539 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTG # Right flank : | # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //