Array 1 242454-241649 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFXQ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain E77C1 NODE_3_length_358638_cov_16.535005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242453 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242392 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 242331 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242270 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242209 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242147 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 242044 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241983 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241922 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241861 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241800 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241739 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241678 29 96.6 0 A............................ | A [241651] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260567-258586 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFXQ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain E77C1 NODE_3_length_358638_cov_16.535005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260566 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260505 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260444 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260383 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 260322 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 260261 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 260200 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 260139 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260078 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 260017 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 259956 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 259895 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 259834 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259773 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259712 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259651 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259590 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259529 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259468 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259407 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259346 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259285 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259224 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259163 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259101 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259040 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 258979 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 258918 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 258857 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258796 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258735 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258674 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258613 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //