Array 1 180728-179619 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPLZ01000001.1 Pseudomonas sp. NCCP-436 Sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180727 28 100.0 32 ............................ TTGTGCGGGACCAGCGGCCCGAACAGCCAAAA 180667 28 100.0 32 ............................ CTGGTCGAGCCTCGGGGAAGGCCCGCCAGAGG 180607 28 100.0 32 ............................ AATGCCGCCAACGGCCCGGAGATTCCCGAGGT 180547 28 100.0 32 ............................ GTCTGCGCATCGATGCTCAGCTCATGCGTCAG 180487 28 100.0 32 ............................ AGCACGGGCGCCGGAAGCACCATCACGCAAAA 180427 28 100.0 32 ............................ TCAGCGTCGAGGATGTACAGGGTCACGACTGA 180367 28 100.0 32 ............................ TGCGCGAGTCGGGGATTCTGCCGGCTGGCCGC 180307 28 100.0 32 ............................ TTGCCCGCCAGCGCCTGGGCGCGCTCGATCTC 180247 28 100.0 32 ............................ GCTGGGCGTAATGTCACATGGTCGGGAGAATT 180187 28 100.0 32 ............................ TCTAAAACCAGCTTGGCCTGCCGTGTGGTTTC 180127 28 100.0 32 ............................ CCATGCTTCAATCACATCCTCCGGCTCACGGA 180067 28 100.0 33 ............................ ATGCGATTTGATGACGTGCGCGACGGCTATCTC 180006 28 100.0 32 ............................ TCCTCGAATCAACGCCCGAGGCCACCATTCTT 179946 28 100.0 32 ............................ GCCTGGCCGACATCAGCGACGAGGGCGTGGCA 179886 28 100.0 32 ............................ TGGTGGCGACGGATGCCGATGCATGGGTTGCT 179826 28 100.0 32 ............................ ATGCCCACCACGGCGGTGGCGACGGTGCGAAT 179766 28 100.0 32 ............................ GGAGGCAACCGCCGCAACCCTGGCCGCCGCGA 179706 28 100.0 32 ............................ CCAGCGTGCCCGAGGTGCAGGTCATGCTCAAC 179646 28 89.3 0 ......................G.TT.. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.4 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCACCGGCCGTATCTCCAACATCCCGGGCTTGCTGCAGGGCTGGGTGAGCCTTCGTATTCCTCGGCGGCAGCGCGGGGGCGCTGTCAGAGTTCAGATACGCTGTATCCACAGCGGCCTGAGGTGCGTTAGGTGCGTTCTTGTTCTTCTTACCGGCCATCTCGTCTATCTCCGTTAGTCTTAAACGCGAGTCGCGTAGACCCGGAGATAGCTGCCCAAAGTCCCGACTGGCGACGAACGGGCACCCACCTTCCACACTGGCCATAACACTGCACCAGCTGTGACCCAGGCCCGGCTCAAACCCGCCATCACGTTCTGCTGCAATGGCGTTACCAGCAGCGCCAAACAACACCGATAGTACCGCCCGTATCACCACCCTTTTTTGAAAGCCTGTTTCAGCCCCTTTGAAATCAATAACCTGGAGCGCAGCCAGAAAAAGGGTTTTACCTGCCAAACAGGCAAAAACCCGGTATTCAAAAGGTCTGTAACGGATTAGGCTCTT # Right flank : CAAAGCCCTGCACGGACTCGGGTCTATACACCGGTGACCATGCAGCGCTCTTCGGAATGCCTGCGCTACAGCGAAGAATGCTTAGCCTTTATCGCACTGGAATGTGCCCAGCAGCAGGTTCGACAGTACTCCGCCCTGTGAGCGACCATCCTCGCCTGATCCCAGGGCAATGACCGGGACTACCGACATACCTACGCCCAGGCGTTCAAGGCCGGACTGGTCCGGGTCGAACAGAATGCGCACGGGAAAACGTCGCACGATCTTGGTGAAGTTTCCGGAAGCATTATCCGGCGGAATAACGGCAAACTCGGAACCGCTGGCGCCAGATATGCTTTCGACATAACCGCAGAACACCTGTCCGGGGAAGGCATCAACTTCGATCTGAACCCGGTCGCCGCTGCGCATTCTCGCCAGTTGGGTTTCACGCAGGTTGGCCTCCACCCACAGATCCCGAGTTGGGGATATGGCCATCAACCGGCTACCCACCGATACATATTCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 195934-195066 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPLZ01000001.1 Pseudomonas sp. NCCP-436 Sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 195933 28 100.0 32 ............................ CCCAAATTGGTATGGAATCCCATACCGACTAT 195873 28 100.0 32 ............................ CTGAGATCGACCGCCTCAATATCCAGTTTGAA 195813 28 100.0 32 ............................ TGGAGGAAGCGCAGCGCCAGGTGAAAGGCGGG 195753 28 100.0 32 ............................ AACCAATACCGTTGAGCCATCGATTGATGGAA 195693 28 100.0 32 ............................ GTGCGTCTATGCCGGCCTCTTCCTCGATCATC 195633 28 100.0 32 ............................ ATCGCCAGAGCCAGATAGACCGGCCACGGCGC 195573 28 100.0 32 ............................ ATTACCCTTTTACTCCAGGTTGATGCCGCGGA 195513 28 100.0 32 ............................ TTGCCGGTGTTGAACGCCTTCGAGACGGCGGT 195453 28 100.0 32 ............................ AAGTCGATCAGGCTGCCAGCGCGAACCGGCTC 195393 28 100.0 32 ............................ CGCGACACGCCTGAACGTATACAGCCGCCTCG 195333 28 100.0 32 ............................ TAATCGAGCTGGGCGGTTAATCGTGGCAGATT 195273 28 100.0 32 ............................ TGGACGCCCGTCTTGCTGAGCTTAAGGCTTTA 195213 28 100.0 32 ............................ ACGCCGCTCGCGGACGAGCCGCTGACCAATTG 195153 28 100.0 32 ............................ ATCGTGGTCGCCCGCGAAGCGGCCCGGCGAAA 195093 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : GGCACTGGATAAACTGCTGGCACTTAACTGGCTGAGCGGCATGCGCGACCACCTGCATACCGGAGAGCTGGCACAGGTACCGGCTGGGGCAAAGCATCGCCTGGTCAGCCGCGTACAGGTCGACAGCAACCCCGAGCGCGCCCGCCGGCGCCTGATCAAGCGCCACGGCATTAGCCTTGAGGAAGCCCGCCAGCGCATCCCGGACAGCGCCGGCAAACGCTGCAACCTGCCCTATGTGGCCATACGCAGCAACAGCTCGGGGGAGCGCTTTAACCTCTTTATCCGCCACGGGCCACTGCTCGACAGCCCACAACCCGGAACCTTCAACCGCTACGGCCTAAGCAGTACCGCCAGCGTGCCCTGGTTCTGACCCTTTTTTCAGCCGTAAATTTAGCTCTTTAAAAATCAATGAGTTACAAAGCGGCTAAAAAATAGGGTATTGGACGCACCAACACCCTCCAGGCCTTTTACTGCGCAGGCCTGGAGGGTGTTAAGCTCTT # Right flank : AACCAGCAGCGCTAGCTGCGCTGCAGTAGGAAGTTGCTGACTCGCTCTGCCGTATCCGCTGGCCATTCCTGCATAAAGCAATGTCCGCCCGGTACTATCTGGGTGCGGATATGCGGATTGCCGGCGCACCAGCGGGCTACCGAACGAGCGACGAAGGGGTAGGTATGCGTGCCATGGATCACTTCGGTTCGAGTCGTGACCCGCGCCAGCGACGGCCACAGGCGACGCGGGAAGGAACCAAATATCTCGGCCTCGCGGCTGGGCCGGCACTTGAGTTCGACACCGTCCGGCACATCGCGCAGGGCGTGCTCGATATAGGCGTCGAAAGCGGTCTCGTCCCAACCCCGGAACATACCCCGGCCATGTAGCGCGGCATGGGCAGCGGCCCGATCCGGCCAATGCCGGCGACGTTTGCGCGCCCGCTTTGCCAGTCCGCTGCGCTGCGCCAGACCGACCACGTCGGACAAGGCCATGACACCGATCATCGCCGGGCTGAACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //