Array 1 431188-432252 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNJ01000002.1 Salmonella enterica strain BCW_4937 NODE_2_length_558085_cov_2.1086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431188 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 431249 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 431310 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 431371 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 431432 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 431493 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 431554 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 431615 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 431676 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 431737 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 431798 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 431859 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 431920 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 431981 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 432042 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 432103 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 432164 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 432225 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 448423-449979 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNJ01000002.1 Salmonella enterica strain BCW_4937 NODE_2_length_558085_cov_2.1086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 448423 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 448484 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 448545 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 448606 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 448667 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 448728 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 448789 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 448850 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 448911 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 448972 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 449034 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 449096 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 449157 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 449218 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 449279 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 449340 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 449401 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 449462 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 449523 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 449584 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 449645 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 449706 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 449767 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 449828 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 449889 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 449950 29 93.1 0 A..............A............. | A [449976] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //