Array 1 37039-35682 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXEP01000005.1 Streptococcus canis isolate FMV2238.02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 37038 36 100.0 30 .................................... TCAAGCAGGACTTCTAGATGAGGTTCAACA 36972 36 100.0 30 .................................... CGGGTAGCTAAAAGGTCACTTTTGTGCGAG 36906 36 100.0 30 .................................... GTACACATGGTCTGGAACCTACCTAGTCCC 36840 36 100.0 30 .................................... TGTAGAGGTGGTTAAGCAAGCTGATGACAT 36774 36 100.0 30 .................................... CTTTCTAAACTGGTTTCTTAGAGATTGTAT 36708 36 100.0 30 .................................... AATTGACATGACTACGGGTTACCCAAAAGT 36642 36 100.0 30 .................................... TGGTTATTTCAACCGCTAGAGCAATACAGA 36576 36 100.0 30 .................................... CAAGTGATGCCGATTTTTATGATGATGTCA 36510 36 100.0 30 .................................... AAAAGCTAAATGATATGCACATGCTCAATG 36444 36 100.0 30 .................................... ATTATCTAGAAAAGTCGGCATGTCGAAATC 36378 36 100.0 30 .................................... TTTATAGGAAAAATTTCTTATCCAGAAGTC 36312 36 100.0 30 .................................... TGCTGGTAAAGAAGTTATGTACATTAGTCA 36246 36 100.0 31 .................................... TAAACGGTTATAAAGAAGTAGGTATCGCTAG 36179 36 100.0 30 .................................... GCTTAAACAGGTACAACATAGATTGGGGCA 36113 36 100.0 30 .................................... TTATCAAGGGATAATCCAAGACGCCGTTGC 36047 36 100.0 30 .................................... TAAATGGATTGCTATCGATGTAATCTAGTC 35981 36 100.0 30 .................................... CCAACTTAATCAGATAATAAAAAGCCTCAT 35915 36 100.0 30 .................................... ATCAGCCATTGAACGTGCGGTAACGGCTGG 35849 36 100.0 30 .................................... TACGGTTGCAAGATTACGGTCAAACCTAAC 35783 36 100.0 30 .................................... GACAGGCTGACATGATTGAGCTGCTGACCA 35717 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.7 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : CACAGCCTGACGACGTCCACAGCGAGCCTAGTTCGCCTTATAGTAATGATAGCACTCAGTTGGCTGAATGCCCTTGTTTGAGGAAAGTCACTACCTTATGAATGGTTTGACGGCTTCGCTTAAGTGATTGCGCAATTTCGAGGACAGAAGTATCTTTCTCAACAGATGCCTCTATCATTACGAGCTCATTTGTGGTAAGAGGGGCATGGGTCATTTCTGTTACTTCCTTTCAGACAAATGTGATGTTTATCTGAGCCTAACATAGATGGCTTTTTCTGTCTAACTTAATTTTACAAATTGGGCACATAAAAAATTGTAATGCGACAGAACAAAGGCGAAAAGAAGGTTTCATGCGTTTGTCGTGCTGGGATAAGAAGGGAAGTTGATTCTATAGGTTTTTTGGCGTATAATATAGTTATGAAAAGGGCTGTTTAAGACTAAAGTCTCGCTAAGACAAATAGTGCGATTACGAAAAATTGTGGACGAAAATAGTCTACGAG # Right flank : AATATCGTCCATGGTAACTTGAGAGAGGAATAAAGACAACATCCTTAAGCCTTTCTATTCTTTCTATTAAAATGTTTTCATGTTATAATAGTCAAAAGGAGAAAGAAAGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCTGATGGGGTGAAACGGGGATTAGTTGGGGATATTTTGCGACGTATTGAGCGGCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGCTCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGTTGGAAGCTTACATGACCAGTGGTCCTGTTTTAATTGGGGTACTTTCTGGGAATCGGGTGGTTTCGTCTTGGCGAACCATGATGGGGGTAACCAATCCAAAAGATGCTCTTCCTGGCACTATTCGTGGTGATTTTGCTCAGGCTCCTGGTGATGATGGTGGCATTTTTAACGTGGTTCATGGGTCTGATTCTCTAGATTCTGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 6662-7093 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXEP01000049.1 Streptococcus canis isolate FMV2238.02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6662 36 100.0 30 .................................... AGACCCTCTTTGTAAAAAACAGCTTCCTCG 6728 36 100.0 30 .................................... GTTATCGGCGCAATCGTTAAAACACGTTAG 6794 36 100.0 30 .................................... CAAAATAAAAACTCCCGTTAGGGAGTGGAA 6860 36 100.0 30 .................................... TCATCTTTTGTGTACGCTCTGCGGATACCT 6926 36 97.2 30 ............T....................... AGGTAGTAAATGGTTTAATGCTCTAGCTGA 6992 36 97.2 30 ............T....................... TTTATTAAAAATTGCATCTCGTTTACTAAA 7058 36 97.2 0 ............T....................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.8 30 GTTTTAGAGCTACGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGATATAATACTCTTAATAAACGCAGTAATAAAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CGTCCTTGACAAAATCACGGTTACCAATATGTTTGCCAAATTTCAAGTTCAAGTTAGCCAGTCTGTAAAAACTCTTTAGGAGATTTATAATTGAGTAGTTTCTTTGGATAGTGATTAATCCAGTTTTCAATAAAAGCGACTTGTTGTTGAGTCGCATTTTTACTTCCCTTTGGTAACCAACGCCGAATGAGTCTGTTGTGATTTTCACTAGTTCCTCTCTCCCAAGAGGAATACGGGTGAGCATAGTAGATATAATCAGGGTCAAAAACTTCTGCTAAACAACTCCGTTATCAGCTGTGATAGAGTTAATCTGATAATCTCTGAGGATAGTTTTCAGAGCTTTGTTCACTGAAGACGCAGATTTATCAGGAATGAGTCGAATGATTTGGTAGCGACTTCTTCTGTCAGTTAGAGTCAACAGACACTCGTTTTTTGCCCTCGTCTGAATAACCGTATCAATTTCAAAATCACCGATATTCTCACGGTTATTGATACTTGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTACGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //