Array 1 15158-16319 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LNXT01000031.1 Legionella birminghamensis strain CDC#1407-AL-14 Lbir_ctg032, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     15158	    32	 100.0	    35	................................	TTTTGTAAATATTGGTATTCGAATCAAAAGAATTT  	
     15225	    32	 100.0	    36	................................	CCAGTTTTCAGTATCAAACTCGCTGGCTACACTAAT 	
     15293	    32	 100.0	    36	................................	ATTTTTAACTCCCCCCAGACTATAGATAACCATAAT 	
     15361	    32	 100.0	    33	................................	TGTAGCATCTGATAAAACCCTTACTTTGCCAGA    	
     15426	    32	 100.0	    36	................................	ATGTCATAGTGAATTAATATCATGAGTATATGCCAA 	
     15494	    32	 100.0	    33	................................	GCTACTCCTTAATCTCTTCTCTCATTTTAAGTA    	
     15559	    32	 100.0	    34	................................	AACGATGAAACTAGGGCGTTGCCCGTCTGAGGTT   	
     15625	    32	 100.0	    33	................................	AGTATCCGCTCAAAATAGAGTTAGATATTATTG    	
     15690	    32	 100.0	    34	................................	AAGTTAAAAATGCCTGAAGGTACCAAAGACCAGC   	
     15756	    32	 100.0	    33	................................	AAGAATGTGCCACAGAATAGTACTTTTTCAGGA    	
     15821	    32	 100.0	    33	................................	TTGTTCTGTCAGTGTCACGCTATATAAGTCGGC    	
     15886	    32	 100.0	    33	................................	TTTTTGCTTGAACAAATTAAGTGCTGCAGCTTG    	
     15951	    32	 100.0	    34	................................	AAATTTGGAACTCTGAATGTACCAACTCCACCAG   	
     16017	    32	 100.0	    37	................................	TAAAAAACCAATGGTATTTGCAAGACTATATCGAATA	
     16086	    32	 100.0	    34	................................	ATTATAATGTACACCGTCATAATGAAAATCAAGG   	
     16152	    32	 100.0	    36	................................	AAGCTGTGGCGTGTTCTGCTGTTGCTCACCTAAAAG 	
     16220	    32	 100.0	    36	................................	GTTTAATTTTAACTTTACATTCGTGCCCATTATGTC 	
     16288	    32	 100.0	     0	................................	|                                    	
==========	======	======	======	================================	=====================================	==================
        18	    32	 100.0	    35	GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC	                                     	       

# Left flank :   GGTGAAATAATGTTAGTGCTCATAACTTATGATGTAAATGTCACCTCAAAAGACGGACAAAGCCGCTTGCACAAAGTTGCAAAAATTTGTCTGGATTATGGAATGCGGGTACAGAACTCTGTTTTTGAGTGTGAAATTGATCCCGCACAATTTGCCCTGCTAAAAAGCAAATTACTCAGAACAATTAATCCTGAAGTGGATAGTTTGCGATTCTATTTTCTAGGAAAAAAGGGAAGGAAGAGGATTGAGCACGTAGGTGCAAAGCTTGTTCCCGACCCACTTCGGTCGCATCTGATTATATAGTTATCAGGAAGAAAATTTTTTCCGCTAAACTGTAGTAGTCAGAAAAATCCGGTTGGATTAGCGGTTCCTTTAGTAATTGATTTATTTAACTAATGTAAAAAACTCTTTAAAAATTTGACGCTTCTCTAAAAAAATCGCTTCGATTAACGGAATCAACGTGAATTCTACTTATTATTCAATATAATTAAAATGAGACA
# Right flank :  CTTTTTGACATTGTATGTTCCGAGTGCCGGAACAACGTGGCGCCCCACGCGGGCTGAGGAATCCCCTCATTTTTTCATTCAAAAAAACGTACCTTATTAGGGTCAAAATGACTTTAAATAATGTCGTTTCCGCGTAGCGGAAATCCATCTTGCAAACAAAGTTAGGAATTATCTTGAGAAATAGGGTGGATACCACCGAATCCCCGCGGCTTTGACCGCGGGCCCACACGAAGCCAATTTAATGTTAAGCACACTTGTTTATGACTACCCGTTAAATCTTATTTTTTGGCAACATTCAAACTTGTTTGAGGACCATGCTACTCCAACAGGCATGGGCCCCGCGGTCAGTGCCGCGGGGATTCGGACGGGGAAAATATTGGTGTAGATAGCTATGGGCTGCGACCGCGGGCTAAGGATGTTTTATCAACCTCAGTTTCCGTTGTCTAAACAGGGGGATTTCGTTAATATCGCTAAAGAAAAATTACAAGAGACGATAAAAT

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-9.00,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.64,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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