Array 1 45305-48646 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUXV01000022.1 Moraxella bovis strain CCUG 2133 2133T_ctg_0000022, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45305 36 100.0 27 .................................... GCGTCGGCTGGATTATGGACGAAGGTA 45368 36 100.0 27 .................................... CCACAAACCATACAATCCCAGTTATCA 45431 36 100.0 28 .................................... AATAGCGGTACAAGGGCTATTTAATGGC 45495 36 100.0 27 .................................... GTCTGGATAGCGGTCATCTGTCATAAT 45558 36 100.0 27 .................................... ATTTGAGCGTTAATCCATTTTCTAGCC 45621 36 100.0 28 .................................... TTTACTTGGTATGAGATACGCCAATTAT 45685 36 100.0 28 .................................... ACACAGTCAAAGGCTTTGCCATAGTCAA 45749 36 100.0 27 .................................... AACCCTTTAAAAAGTTTTGACTATATA 45812 36 100.0 28 .................................... CAAGCCTTAACCGAAATCGCCAAAAAAA 45876 36 100.0 26 .................................... AGGCTATAACATCTTAGGCGATTACT 45938 36 100.0 27 .................................... CTGCCTAAGACTAAGACGGCGTATACT 46001 36 100.0 27 .................................... TTATCTAAACCAACTTAATGAAGTCGT 46064 36 100.0 28 .................................... AGGTACATCAAGCGGTGGAGTATGTGCA 46128 36 100.0 28 .................................... CATTGAATGTGAAACGCCATATTTTAGG 46192 36 100.0 29 .................................... AACGATATTTATGACAAAAGATATTATTT 46257 36 100.0 28 .................................... CTTGATGGGGGTATTATAACCAAAGTAA 46321 36 100.0 27 .................................... GCACACGTCTGCCTTTTTTATAATCTC 46384 36 100.0 29 .................................... TCCACGCAAATGAGTATGAATGTATTGGG 46449 36 100.0 28 .................................... TTTTTAGAGAGCCTTGTAATACCAAATC 46513 36 100.0 27 .................................... TTCAAAAGCTCGCTTGTGAGATGATAG 46576 36 100.0 28 .................................... TCCAAATTGGTTAAGGTGCGTTTTCGGC 46640 36 100.0 27 .................................... TTAATTTTTATTGGCTTAACACAGCTG 46703 36 100.0 28 .................................... TTGATTACACCAAAAATGGTGTATAACC 46767 36 100.0 27 .................................... AAAATACAGGTGCAATCATGCAAAAAC 46830 36 100.0 29 .................................... TTTTCTTGCTTATCAGCAAGGTTTGGTGT 46895 36 100.0 26 .................................... GATGGGGGTATTATAGTCATAACTAT 46957 36 100.0 27 .................................... TAATCAAAGGTAAAGCAACTATAAGTT 47020 36 100.0 29 .................................... ATGAGATACGACAAAATGGCGTTCTCTCT 47085 36 100.0 25 .................................... GTGGTCTCACTCTCGGCTTTACTAG 47146 36 100.0 28 .................................... GCGTAACGTTCCATCGGACGATTGGGGG 47210 36 100.0 28 .................................... GCATAAATCAAGATGGGGCAACACCGCT 47274 36 100.0 27 .................................... TAAGGCGGGAACACAACAAGCATTATC 47337 36 100.0 26 .................................... TGTAATCTATGCCAATAGAATTATAA 47399 36 100.0 28 .................................... AATACAAGTATTGTTAATTAGTGTTTTA 47463 36 100.0 27 .................................... ATTTGTCACATCGGACATTCATGATAG 47526 36 100.0 28 .................................... GACATAGGACATTTCCTTTCTAGGTTAA 47590 36 100.0 29 .................................... TGACATCGTGCCAATCAAGGTTTTGGCGA 47655 36 100.0 30 .................................... TCCTGTGGCGAGCCAATGGGGGTTTACGCC 47721 36 100.0 27 .................................... ATAAAAAAAGCGATGATGACACTTTGT 47784 36 100.0 26 .................................... CCATGCAAGGGGGTATTTGCACAGTA 47846 36 100.0 28 .................................... AAGAGCGTCCGCAGCGAAAGCGGACGAT 47910 36 100.0 29 .................................... ATATGGGTATAATGAGTATGTTTTTAACT 47975 36 100.0 28 .................................... CTTCAATCCCTGACGCATTCCATAATAA 48039 36 100.0 28 .................................... TAGGGCGGTTAGCGGCTCAAAACCTGCA 48103 36 100.0 26 .................................... CTGATGTTGCGGAGATTTTGGAAATT 48165 36 100.0 26 .................................... TTTTGTGATAAAAGCAATGGAGTTTA 48227 36 100.0 27 .................................... TAACTGCCGTATGCACGACAGCGATGA 48290 36 100.0 29 .................................... ATCCCAAAATTGGGATATAATTAGCCTAT 48355 36 100.0 29 .................................... CTCCACATTCTCAACATTTTTTTATAGTG 48420 36 100.0 29 .................................... CCTAATGGTGGCTAATTCTGCGGTTACTC 48485 36 100.0 26 .................................... AAAATAACGCTTGCATAGAATTTTAT 48547 36 100.0 28 .................................... CACAAATACACCGTTGGGGTATTATCGT 48611 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 53 36 100.0 28 ATCTACAAACAGTAGAAATTTAAAAGGTCGTTAGAC # Left flank : TGGCGATGAACATACCACGTTGGTGCCGTTTGAGCGTTATGCGATGATGAATAACGTGTATTTTTTGCCGAGCGTGCCTGCGTTGACAAAATGGCTTGGCAAGGTGGGTTTTGTTGATGTGCGTTGTGTGGATATTGATGTAACCAGCACTGATGAACAGCGTGCGACCGAGTGGATGAATTATCAGTCATTGGTGGACTTTTTGGATAAAGATGATAAGACCAAAACCGCCGAAGGTTATCCTGCCCCCAAACGGGCGGTGATGATTGCCAAAAAGCCCTAATGCAATTCCAAAAATTTAATAGGCTTCTTTCCAACCCCCGATTTTTATAGATTTTTAAAAACTTTAACCCCAGTGTTTATAAGGGGTTGTTTTTAGTTTGGAAAGAGGTTTAATGTTTTCATAAAGATACCCTTAATTTTGAAATGGATTACAAGTGTTGCACCTAGAAGTTTAAAAAAATCGTTAGACTTCCAACCAATACGAGAAAATTTGTGAT # Right flank : CCCGTTTTGAGGTATTTTTAATGATTTTTTGAGAAATTAGCAAGTTTTTTGCACAAAAAATAATCATTTTTACCGACAAAACATGATAAATCACGCATTAAGACTGGGGTTTGCAAAGTAAATATTTTAGCTTGATTTAGCTCTCTTATTATAACAAACCTCATCATTTTTTCCAAGACTTTTTATAAAATCAACAAATCCTCATTGCGATGTTTGGCATGGCCAAACCTTAATACTTCACGTTCTGTAAACCGAAAAATAATCACACTATCCGCCCCTGTAAATAAAGGCTCAAATTCTGCTTTTATTTTTTCGGTGATGATATTTAAAATGCGTTCGCTGTTTTGGATTTCGTACACCGAATATTGCAATCTATCGCCATATTGCATTAAAAATTTGGCAAATCGTCCACGCACTTTATTATCACTGATATCATAACTGACGATTATCATACATCTTCTCCATTTGCTTGTATGTCAAAGCTTGGCAACATCAAAACT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAAACAGTAGAAATTTAAAAGGTCGTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 30709-31458 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUXV01000028.1 Moraxella bovis strain CCUG 2133 2133T_ctg_0000028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30709 28 100.0 32 ............................ CTTTGCTATTGATACCGAAAACCAAACTGGCA 30769 28 100.0 32 ............................ CTGAATTTATCCTACAAGTATTGACACTAGTC 30829 28 100.0 32 ............................ AAACCTGTAATCATTGTCACAATTGGGGTCAA 30889 28 100.0 32 ............................ TTTTAGTGCTTGTCTTTCAAACTGCTTTAACT 30949 28 100.0 32 ............................ TTAAAAAACGGTCGCTTTGGTCAAGTCTTTGT 31009 28 100.0 32 ............................ TTAAGCGACTTTTTGGAATAGGTGCTCATAAC 31069 28 100.0 32 ............................ ATGATTCGCAGAATGATGCGTTAATTATGTCT 31129 28 100.0 32 ............................ TTTCTATGGCTTGTGCCGCCCCTTGACCAGCA 31189 28 100.0 32 ............................ GGCGATAGCCGATTAACCGCCGAGCAGTTGAA 31249 28 100.0 32 ............................ CATCAATGTCAATTTGTGTATCTGTATCTTTT 31309 28 100.0 32 ............................ ACCTGAGGTTAATCCCATTGGGACAGAGAATC 31369 28 100.0 34 ............................ CAAAACCCGTACCCGACGACCAACCATTACCAGA 31431 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.7 32 ATTCCACATCGCATAGATGACTTAGAAA # Left flank : TCAAAGCGATAGCGGACGTTGGCGAGCGAGCGACAGGCTATGTGGTGGTGGAGCGTTATCGCCATTATGACTTGGGCAAGCAGGTGGAGCGGTTTGCTGATTTTAAAAATTTGACAGTGGAGCAGGCGCTGGAGCATTGCCTTGCCCACAAGAAAAAAGCCAAAAATTACCCCTTTGTCCGCCTAAAAAGTGAGACCAACCAACGGCAGTATCATCTGCATATCCGCCAATATACGGTCGCCAAGCCACAAACGGGGGTGTTTAACACCTATGGCATTACCAACATTAATGACGAGACCAAGGCAAGCGTTCCGCATTGGTGATTGGGGTTGGTTGTGCTAAAATAAAGGGCATGATACAGGTTTACACCCTTTATTTTTTGACTATTTAAAAACTTGATAAAAATCAAACATTTATAAACAGGCGAAAAAACATTGGGTAAACGCCCAAAATATGGCTGTAAGCCTTGATATAAGTGGGTTTTATGTTGTATAATTCTT # Right flank : TTTGGTAGTAGCCTAAAAAGTATGCCAAACTAGTTTTCCGTTCGCCCTGAGCCTGCCTGCGGGTAGGAAAACCGTTAGGTTTCCCAAGATCGCCACGAACTGTTTTCTTTGTAGCATACTTTTTGAACCAGAGCCTTATTTTTTACCTCTTAAACATACAATCCAACC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCACATCGCATAGATGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //