Array 1 1588762-1586750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049795.1 Delftia sp. WY8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1588761 32 100.0 33 ................................ GATCTCTTTCATCCCCGTGTATTGCCCGCCTGA 1588696 32 100.0 33 ................................ TTTTCGTCAACCTCTTGCTCGAGGTCCGCACCG 1588631 32 100.0 37 ................................ CGGTGCAGCAGCAGGCCGTGCCTGCCGTCCAGCAAGG 1588562 32 100.0 34 ................................ GTGCCAAGCGCCCTGCGTGTCCAGTTCAGGGTTG 1588496 32 100.0 34 ................................ ATGAGGTAGGCCACGGGCGCATAGGCCTCGACAC 1588430 32 100.0 34 ................................ GCCAAGCTCTGCGGCCACTTCTCCTGCTACCACG 1588364 32 100.0 34 ................................ TTTGTTGGGTCCAATGCGCCACACACAGAGCTCC 1588298 32 100.0 34 ................................ TGACCAGGACCAGACGGGCGCCAAATGCGCTGAA 1588232 32 100.0 35 ................................ GTCAGATAGTCGTCGGCTGTCCCGAGTCGGTCCAG 1588165 32 100.0 34 ................................ ACTGCCTGCGACCGAGCTTGCTGGCCCCTTCGAC 1588099 32 100.0 34 ................................ ACGACTACTTCGCGGACATGGTGCCGACCATCAC 1588033 32 100.0 35 ................................ ACGCATATTGCGGAACGGCTGGGCGTGCCGCGCAC 1587966 32 100.0 33 ................................ CCGGTCCTCAATTATTGTGCCCGTTTGGTCTAC 1587901 32 100.0 33 ................................ TATTTCAAGGCCTATCTCAAGGGGCCGGAACTG 1587836 32 100.0 35 ................................ ATGCCGCTTTTGCGCTGATCGGCGCGATCGGGGCG 1587769 32 100.0 36 ................................ CATAGGCAGCTCAGAAATGCCCGCTGCTGCAGCGCG 1587701 32 100.0 35 ................................ GCAACATGACCTTCTGCACCTGAAGTGGGTCCTGT 1587634 32 100.0 35 ................................ ATGCTGCACCGCCCTTCGTGCGCTCGATGACGTGA 1587567 32 100.0 33 ................................ CGCATGCAGCACATCCCACTGCCCTTCGTTGCC 1587502 32 100.0 33 ................................ TATGTGACGCGCAATGGCGATCTGGCGCTCCAG 1587437 32 100.0 33 ................................ TGCTGCAGTGGTGAACGGCAGCGTGCGCGCGCC 1587372 32 100.0 35 ................................ CGTTTCCGTAGCGCGCACTAAGCGTTACCCCAGAG 1587305 32 100.0 33 ................................ ATGGGGCAGGGGGCCTGGATGAGTCTGGCCGTG 1587240 32 100.0 29 ................................ AAGTCTGGTTACTTGACCGGCTACTACGT 1587179 32 100.0 34 ................................ TGCCCATTGATGAATAGGCCGTTGCCAAAATGCC 1587113 32 100.0 32 ................................ TCCGTAGTCTGTCGGGCTTGCCTGTTGAGATT 1587049 32 100.0 34 ................................ TTACACATAGGAGCCGGCATGCCCCCCTCGCAAC 1586983 32 100.0 35 ................................ GGAATCCCCTGAGGCGCGCTCGCGCGCTGCAAAGA 1586916 32 96.9 35 ..............C................. GGCAATCTGTTCAACGGGATCGGCTCTGGATTCGG 1586849 32 93.8 36 .........G...............C...... AATGACATGGACGACGACATAGCGTTCTAGGGGGTC 1586781 32 93.8 0 ................T.............G. | ========== ====== ====== ====== ================================ ===================================== ================== 31 32 99.5 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGCGTCAGCGGCTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCAGGCAACCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCGGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCTATCCTGATCAACCGCATGAAGGTGGCTGGTAGCTGATCGGCTTGCGGCTGCGCATGCTGATGAAAAGCGGCCCGAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGCCGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACTGCGTCTGTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGCGAAGCTTTTTTTGCAGTGGTGCGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGACGGGTTCTGGCAATGGCTGGCAGCCCGATGCCTGCATGTCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGACGCAACTGATTCAAATTGTCAAATTTGTTCCCGGATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCATGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTTGCCAGGAACGGCCTGGTCAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1612401-1610445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049795.1 Delftia sp. WY8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1612400 32 100.0 35 ................................ AGCGACGGCCGACGATGGATCGAGCGACATCGAGC 1612333 32 100.0 33 ................................ TGCTTGTAGAAGACGTAATTGCAGGTATCCGTG 1612268 32 100.0 35 ................................ TGCGCCGGCGATGACGGGTGGGCCAATGTCCTCGA 1612201 32 100.0 35 ................................ ACATGGGAAAGCCATCGCGGGAGGGCGGCGCAATG 1612134 32 100.0 35 ................................ TCGTCGTACAACCTGGTGATCTCATGGCGGTAGAT 1612067 32 100.0 34 ................................ CTTGAACTCATCACGGGACGACTGCGCCCGGGTC 1612001 32 100.0 33 ................................ CGCGCTCTCGAAATACGGGCGCGCGGCCCACGC 1611936 32 100.0 35 ................................ GGGAACAAACAGCCCCGTAAGCGTGATGGTGTCAT 1611869 32 100.0 35 ................................ TCCGATCGCCCTGGGGTGGTTGCGCTGCAGCAGAC 1611802 32 100.0 35 ................................ GGCCCAAAGGATGCCAGCGACTGGCTGCGCATCGA 1611735 32 100.0 35 ................................ GATGAGGATTCGTACCGCCTCTTCACGCATGCCTG 1611668 32 100.0 34 ................................ CTGCCGATGGGCGGCGCCTACGCCATCGTTTCGG 1611602 32 100.0 35 ................................ TCCACCATCGTCCAGACGCGCGCCAGCTCCTTCTC 1611535 32 100.0 33 ................................ TGCGTGCTCAAGATGCGCGAGGCCCTGCAGCAG 1611470 32 100.0 34 ................................ GATGTGCGAGGGGGGCATGCCGGCTCCTGTGTAA 1611404 32 100.0 35 ................................ AGCTTCGACTTAAGGTTGGTGTAGTCGTAGCGAAC 1611337 32 100.0 35 ................................ AGCGCCAGCAAACCGATGAAGTGGCGTTGGTCCTC 1611270 32 100.0 34 ................................ AGCTCATCGACGGTGGTGCCGGCCTGGTTGTCGC 1611204 32 100.0 33 ................................ GATTTCAGCGCCGCCAGAGCGCTGGAGAGGCTT 1611139 32 100.0 34 ................................ CTGCGGCCGTTTGTGGTCCAGGTTGTCGCCTCGC 1611073 32 100.0 35 ................................ ATGTCGGTGCTCACGCGAGTGATCGCAGGCATGAG 1611006 32 100.0 34 ................................ GGGTCCGGCTTGTGCATGCGGCTCATCAGCGGGT 1610940 32 100.0 34 ................................ TGGAGCCCCGATGCAATACCAACTGGAGCACGGC 1610874 32 100.0 34 ................................ TGTGCTGGCGTTAGATTGCGTTCCTTGATGCCCA 1610808 32 96.9 33 ....................A........... TTTGCCGCGCCGCGCTCGTCGCCATCGTCTTTC 1610743 32 100.0 33 ................................ GCCAGATAGCGAGCGATGAAGCGGTAGAGGGCT 1610678 32 100.0 34 ................................ CGGCTCTATGAGCTGTCTTCGCGCATCCGCGTGG 1610612 32 100.0 36 ................................ GATAAGGAGGCCTGTGCCTTCGGGCTGGAGCGCCTG 1610544 32 96.9 36 ............A................... CGCGCCAGCCAGGGCATCACCAAGGCCCTGACGCTC 1610476 32 90.6 0 ............C..AC............... | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 99.5 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CCGGCGATGAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGCACCCAGGACCCGGGTGGAGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAATACTCCGTCTTCGAGATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAGCCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGTGCGAGGGATTGGCTGAACGCCGATTCCGCAGCATGACAGTGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCC # Right flank : CCCTGCCGCCACAGAAAGCGCCCCACGCATTTGAAACGAATCGCCTGACTCACTCCTCGCCGCGCAGACCGCCATTGAGAGAGAGTCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCCAGCGAGGGACCTGCATGCCCATCGATCCGCCGGATATAGGGAGATGTGAGCACAGCCATGGCATTGCCATCAGGCCCGAGGATGGGGCAGGAGATGTCCACCACGCCATAGGACTGCAGGCTTTCGCTCTGCCTGTAGCCCGTGCTGCGTATCTGTTCCAGCATGTCGTGCAACTGCGCCTCGGGCAGTGGCACCTCGCCTTCCAAAGGCGTGTGCTCGGCCAGCATCTGCGCGCGGCGTTCGGGTGTCTGGCAGGCCAGCAGTACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATTGACAGGCCCCAGTTCCCGGGGCCGGGGACCTGGGCCACGATCAAGACATTGCCACGGTCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2760101-2757369 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049795.1 Delftia sp. WY8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2760100 28 100.0 32 ............................ TGCTGGTGGACGCCGTCACCGAGCTGGCGCGC 2760040 28 100.0 32 ............................ TTCCTTGGCCTGGGCTGCGATGGCTGCAGCGA 2759980 28 100.0 32 ............................ GTTGCGGTTCACGTTGTCCACCACCCAGCCAC 2759920 28 100.0 32 ............................ GCATCGGGGACATGAGCCCGAGCGCGCACCTT 2759860 28 100.0 32 ............................ AGGAACAGAAACAGGAACAGAAGAGTATTGAT 2759800 28 100.0 32 ............................ TGCTGCGCCTGCAGTGGATGCCGACCCGCAGG 2759740 28 100.0 33 ............................ CCGGTTGATCAGCTCCAGGGCTTGCCCCTCGAC 2759679 28 100.0 32 ............................ AATGCAGGATCGATGCTGACCGGCGCGCCCAT 2759619 28 100.0 32 ............................ ACACGCCAGCGCCTGACATCAACCTTCCCCGA 2759559 28 100.0 32 ............................ AGGTCACGGAAACGCGGCCGGGCGACGGCGCC 2759499 28 100.0 32 ............................ AGTGCATGGTGTGTCCTCAGATAGCGTCAGCG 2759439 28 100.0 32 ............................ AGGCAGCACGGTAGACACGCCGGCCACCGTGC 2759379 28 100.0 32 ............................ ATCAAGAAGGCGGGCGGCCAAGCCGCGCTCGC 2759319 28 100.0 32 ............................ GGCGCGCGGTAGAAGTCCTGCCACTTCATCAA 2759259 28 100.0 33 ............................ ATTCCACCCCACATGGAAGCTGCGCTACCTGCC 2759198 28 100.0 32 ............................ AGCTCCGCCATTGGCATCATGAGAATAGATCA 2759138 28 100.0 32 ............................ ATCTCCAAACGCTTGCGTGCAACCCGCCATTG 2759078 28 100.0 32 ............................ TTGCTGTGGTACTCGTTGGCCGCATAAACGCG 2759018 28 100.0 32 ............................ CGCAAGGCCGAACTCGAAGCCCAGATCGCAGC 2758958 28 100.0 32 ............................ AGTCCATCGCGCCACTGCGCACCATGTCACGG 2758898 28 100.0 32 ............................ AGGGATGCACATCAGCACGTCGATGAGGTGGC 2758838 28 100.0 32 ............................ GAGCCGAAGACGACTGCCGCCGAAGCCTCGGC 2758778 28 100.0 32 ............................ AGCACGTAGTCCAGTTGCCCGGCCGTTCGGAC 2758718 28 100.0 32 ............................ ATACCGGCGACAAGGCCGCGCTGGTGGTCCTG 2758658 28 100.0 32 ............................ AGGAAAAGCAGGCGCTTTCTACATGGGCCACC 2758598 28 100.0 32 ............................ AAAAAGGAAGCCATGCAAGCCAACCTCCACAC 2758538 28 100.0 33 ............................ CATGGCAGCACAACGCTGACAACACCCTCCGGC 2758477 28 100.0 32 ............................ TCGCTTGGCTGGAGGGCGCGAAGATCCCAATG 2758417 28 100.0 32 ............................ CGCTCAGCGCCCCACTGGGCACAAGGAGAGCT 2758357 28 100.0 32 ............................ AATGCGCTGCAGTGGTTTGGATGACGTGGCCT 2758297 28 100.0 32 ............................ CGTCGCCACCAGGAAGACCTTCCGTGCGGCCG 2758237 28 100.0 34 ............................ CCGAATACGAGCAGATGTGGCTCATCCGTCCCCT 2758175 28 100.0 32 ............................ CAGAAGACTACCGAGTCGAGCAGCAGGCGGAG 2758115 28 100.0 32 ............................ AAGCTCCGTGCTCTGCGTCCAACTGGCAAGCT 2758055 28 100.0 32 ............................ CTGGCAAGGGCCTTGCTGGCCGGCCACGGTGC 2757995 28 100.0 32 ............................ TGGAACCCGGGTATTGGGCCAGTGGCGGCCAC 2757935 28 100.0 32 ............................ AGGTCGAAGGTGAAGTAGTTGGCAGCCAGGCC 2757875 28 100.0 32 ............................ AGCGGGAATGTGCCGGGTTCAACTGGCCGCCA 2757815 28 100.0 32 ............................ TCGATCTGGGCCAGGCAGCCTTGCACGGCGTC 2757755 28 96.4 32 ............G............... AAGGTCCGGTCACATCAACGAACAAGATGCTC 2757695 28 96.4 33 ............G............... AAGCGGTGGCCGCCATTCCTGGCCGCCGTTGTA 2757634 28 96.4 32 ............G............... ATAGGTTTGCTCGAACGTGCCCGGCTCCAGCA 2757574 28 92.9 32 ............G.........T..... ATCCGCCTCCAGGGTAACGCCATGCAGCACAG 2757514 28 96.4 32 ............G............... ATGATCCCCGCATACAGGTTCGACAGGTAATC 2757454 28 92.9 30 ............G......A........ ACGGAGCCGCCCGGCGCGGGGGGCGCTCAG 2757396 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================== ================== 46 28 99.3 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : CGCGCTGCGCTGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCTGCCAGCTTTGGTACCAGAGGGCGCCGTGCCCTGCCTGGTGCAACGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGGCGCAAGGGAGAAACCGCCGAACAGGCTGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGCGGGCCAGGAAGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTCTGGCGGCCTGTGGGGTCGCCTTTCAAATCAACAACTTGGCGACGCCTCGGAATTTTGGGGTGTTTTCGGGTTAGGGGTGAAAGTTCTTTAAAAATCAATGAATTGGGAGGATTTTTGTCTA # Right flank : GGCTGCTGACTTGGATGCGACAGAGAAGCCTCTGCCCTCAACCTTCCGGACCATGCTCCGCGTATTCCACAAAGGACGGTGCTTCATCAAACAGTTGCAGGAGCAGTTTCAGGCGCCGGGCGTAGAGGCTCTGTGGCCGGTTGAAGGCCTGGGCTGCCAGGGCGATGGCTGCGCGGGCGAGGTACCACTCGTTGTCGAATTCACTGGCGTCCTCGAATACCTTGTGCCGGATTTGCCGGATGTGGTTCAGCGCCAGGTCTGCGGCCAGGTCCACCTCTACATCCGCGTCATGCCAGTCCATGTCGGCACAGCGTGTTTCGATCAGGGCAACCAGCCCCCTCTCTGCGCGGGCAATGGACAGGGCGATCATTTGCTGCATGGTGGGCCAGGCAGCGGTGTCCATCGTGCAGGGCTTGTTCGTTGAGTGCCGTGACGCAGCCATATCGATTCCTTTGTCGTCGCTTCAATGACTCGGGCTTTCTATGCACGATCTATGCACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //