Array 1 976212-975876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011451.1 Nitrosomonas communis strain Nm2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 976211 29 96.6 32 ......A...................... CCTCATCAATTACGATGAGAGACCCCTCAGCG 976150 29 100.0 32 ............................. AGATCAAAAGAAAATTCTGGGACAGCGTCATT 976089 29 100.0 32 ............................. CCACTTTCAGCGATTTAAGTTTTCAGTATGTG 976028 29 100.0 32 ............................. GAACCAAAAGCTATCACCCGGCAATGAATGCA 975967 29 100.0 32 ............................. GTCTTAACAGTATCTGGCAGTTCAGCATTTGC 975906 29 100.0 0 ............................. | AG [975880] ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : AAGCGTTTAAAAGCCGGATGGGATAATGAGTATTTACGTCGGGTTATTGGGATAATTTAAGCGCGATTGCCCTGAGATCTCACCACCTGCTGCGCCAGATAGTGCTGTACAGCCAGCTATACCAAATCCTGAGAGTCTGGGCGATGCTGGTCATCGTGCTTGAAAATGCTCCGCCCCGCTTACGCGGACGACTGGCTATCTGGTTACTGGAAATTCGTGCAGGTGTGTATGTTGGAAATTATTCAGTCAAAGTACGTGATTACATCTGGAACCAGGTAGAAAAAGGAATTGAAGAGGGCAATGCCGTGATGGCATGGCGCACCAATAACGAGGCCGGTTTTGATTTTGTAACGCTAGGCACTAATCGAAGGATACCAAATGAAATAGATGGTGCAAAGTTGGTTTCTTTTTTGCCTGAAGAAACAGGAGAAGCTCCTTAAAAATTTGGTAGAATTTTACCTTCCTTTTTACCGCTGAAATATCAGCGAGATAGGGGAAGT # Right flank : GGGTGAATCCAAGAAATGCTTGAGGGAGTACACCAGGGTTGTTAGCTAGGCCGTGTCTACAAAATTCTTTTTTCGGAGAAAATTTAATAGTAGACTGCATTACTGTAAGTCGTCTCAAGAATTAGTCTTAATTGTTAGCGCTATACTTCAACTCATTCAGGAGCGATGCCATGAAAATATGTAAGGTTTCTGTCATTTTGATTGTTCTTGCTTCATTGACTTCCTGCGCACACATGCATCCTCATCCAATGGATATGACGCAGGCTATCCAGAATGCTAAAACGCCTGCTGACCATGAAGCGCTAGCCAAACATTATGAAGCGACGGCGAGGGAGATGCAGTCAAAAGCGCAAGAGTATAAGAAGCTACTTGAGAAATACGATGCAAACGCTCCCCACTATGGTAGACAGGCACAAAATTTACAGAGCCATACTGAGGCTTTGATTCATCTTCACGAACAGGCTGCAAAAGCGAATATGGATATGGCTGATTCCCACCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3446623-3445792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011451.1 Nitrosomonas communis strain Nm2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3446622 37 100.0 35 ..................................... TCTAGCTTGCCCTATATATTCCACTTTCACATGCT 3446550 37 100.0 37 ..................................... TCAGGATTGAGCAGGGCAGAAGATGGCCGAATAAAGA 3446476 37 100.0 35 ..................................... CAGACCGTGCCAAACAATACATCGAGCAATAAACG 3446404 37 100.0 34 ..................................... TGCACTGTGCCCATAACAAATACACTGTTTTTGA 3446333 37 100.0 35 ..................................... AGACAATGGTGAGATGTTTGACGAAGAATCAGGAG 3446261 37 100.0 37 ..................................... GGGAAAGCATGGCCAGGCAACAAAGGTGACCGTAGGT 3446187 37 100.0 34 ..................................... CGCCGTGTTCAACGCCCCCGCTTGTATCTCTGTC 3446116 37 100.0 37 ..................................... ATTCATGCGCTGACGGATATCGGTGCTGCCGGTACTT 3446042 37 100.0 34 ..................................... ATTGCGCCGCCCACACTAACCAGTGCGCCCGTGT 3445971 37 100.0 34 ..................................... AGCCGCAATCAGCACCTCAACTATCGAGGTTAAG 3445900 37 97.3 35 ................................A.... TTTTATGCCGGTGACTTTGGCTGGATTCAGAATTG 3445828 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 99.8 35 GTAGCGCCCAGCCAACGAGCTGGGCGAGGATTGAAAC # Left flank : CAAAACCGCCTTCGCCAATGCCGGACATACGCTTGGATATTTGCCGTCTTATTCTCCAGACTTCAATGACATTGAACCAAAATGGGCCCAGGCCAAAACAATCAGAAAAAAGGAAGGATGCTCCATCGAGCAGCTCTTTACCGCCTATGCACTTTAAATCATTTTATATGGGATAAGCTATAGAACGACGACTATTGACTGAGATTGATGAAAAAGAAGACAGTCTTCGTCTATATCGTTTGACGGAACCCTTTGAGTTACACGTGAAAGAGTATGGTAATGTCAAGTCGGTTGATTTTGATGGCCCTTTAATTGTCTGAGTTGCGCGAACGGAAAGTGATCGAAAAATTGCAGGATGTTCGCGCTGTTCCTAACTATATGAAACAAAAATATATTCCTGGAGTGAATCAGTTTATTTACTCTCTAAAAAAATTTGGTAGATGCCAGTTCGCGCATTTACACCAATTTTTACTGATGTATGATGATGTTGTAGTTGTACT # Right flank : AAATAGTTCCAGGCTTCTCCTTTGTTGTTAATGGTTGGGTGGAACTTACTGTTCTATCAGCATGGGAGAGGCCGCCTATTCAGCCAAAGGTCAAGTAAAAGCTATTTAGGGGGGATCAATCTTGATTACTTTTTCTTTTCCGCAATCAAGACAAATGAAAAAAGCATTTTTTGCGTCGAATCTTCCGAACGTTTCTTGGAATGTGCTTTCTATCCTTTTTAACTTTATTGATCCGCAAAGACTACATTGATAATCATGAGGATCTGGGCTATGAAGTTTTTCCATATTTTCAGTAAATGTGAAATTTTCGAGCTTAATATTCTGAATTTCCGATTCGAGGTAGCAAATCATATCCGCTAAAGCGGAAACCTTTTTTCTGCATCCAGTAAGCTCCTTGTCATAAGCAACGAGCTGATCTTTCAAAAGCAGAAGCCGCTCTTTAATAATCAAAGTAGAGTCATTTTCATCAATAAGTTTTTCTGTATTTTCGATGAGCATGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCAGCCAACGAGCTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGCGCCCAGCGAACTGGCTGGGCGAGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.20,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //