Array 1 30092-25427 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPI01000008.1 Vibrio cholerae strain A12JL5W14 NODE_9_length_81661_cov_39.868271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30091 28 100.0 33 ............................ TTCGAGTTAAAGCAATCAGACTGGCAAGCGAGA 30030 28 100.0 33 ............................ TAGCTTGCTTTTTAAACGCTCATTGCTGCGTCT 29969 28 100.0 33 ............................ CGAGTTAGATGCTGTAGCCATGCAAGAGTTAGC 29908 28 100.0 33 ............................ TAGTGTGAGTATCGATTAATAAATATACAGAGT 29847 28 100.0 33 ............................ TAACGTTATGGTAAGGACTGAAATTTTTAATAA 29786 28 100.0 33 ............................ CGTTAGAACCGCGCCTTTTGTAACGCCCTTCAT 29725 28 100.0 33 ............................ CAAAGAGTATCTGAAAGCCCGCAAGGGTGGCGC 29664 28 100.0 33 ............................ CAAATTGATGTGATCGATGCAACCTTTACCGCC 29603 28 100.0 33 ............................ TAACATTGATAAGTCTTTTGTTTCGCTCATGTC 29542 28 100.0 33 ............................ TGGTGATTCGCTTGTGATTGGTGGCAATCAAGC 29481 28 100.0 33 ............................ CATAAATGACCCTCCTTTTTTCCTGATTTTAGC 29420 28 100.0 33 ............................ TTCGTGGATTAAAGAGCAGTGGCAGGAGCAGGA 29359 28 100.0 33 ............................ TGTTGATCGGTGCGTTCGAGCGATTCGATAACC 29298 28 100.0 33 ............................ CAACCATGGCCTGTGCAACTGTCCCCTTGTCGA 29237 28 100.0 33 ............................ CGAGTTTGATATGCTCGCGCCGTCTGACTTGGT 29176 28 100.0 33 ............................ CATTCGAATCTTGAAAGCCAATTCATCCGCTTA 29115 28 100.0 33 ............................ TTGAGAACTGGGCTTTTGACTTTCATTTATACC 29054 28 100.0 33 ............................ TATCACGATACACATCGAAGAAGCACCGATTTA 28993 28 100.0 33 ............................ TCAGTCAGCTTTCAGCCCGTTATTGACGTGACC 28932 28 100.0 33 ............................ CCAGAATTCCCCGCCTCTTGCTGATGGATATTG 28871 28 100.0 33 ............................ CTTAAACCGTTTTATGCGAAAGCTGCGTAAAGA 28810 28 100.0 33 ............................ TGTATTGATAAAGCTGGTTTTGGCGATACCCAA 28749 28 100.0 33 ............................ TGAAAAAGCTTGCAGCAGAAAAGCCAGAGCTAG 28688 28 100.0 33 ............................ TCCCGTGGAGAAGCCGCTTGATGTTCACCCCGA 28627 28 100.0 33 ............................ TCAATTTGCCCCCAATCAGGCGAAAGCAAGTGA 28566 28 100.0 33 ............................ CTCTATTACACCGGACACACCACGCGTCAATCG 28505 28 100.0 33 ............................ CAAAAAGGCTCAAGGTCTTGAATTTATGGCTCG 28444 28 100.0 33 ............................ TATAAACGGGGTCTGTTGGTTCGCTGCGTTCCG 28383 28 100.0 33 ............................ TGACATTAGAACTGTATGTAAAGAGCATGGCTT 28322 28 100.0 33 ............................ CGGCCATCTACACCCGCAACCAGTTTGTTGTTG 28261 28 100.0 33 ............................ TCCATCCTTGTCTACGCTAAAGAAGGTTGAGAA 28200 28 100.0 33 ............................ TCATTGTGCTCAGCTGATGCCATGCCAAATTCC 28139 28 100.0 33 ............................ CCGCTGTAAGACAGCTCGACTCTTACGTTGGTC 28078 28 100.0 33 ............................ CGGCGGTCACTTGGTGGTTTGGTTCTCGCGCGC 28017 28 100.0 33 ............................ TTACTAGCCAAGTGACCTCACCAATGAATTTGT 27956 28 100.0 33 ............................ CATCGTCCGTGGGAATATTGAACTCTTCATGCA 27895 28 100.0 33 ............................ TTCTGTTTCTTGCGGCCTTGGCAGGTCTTCGTA 27834 28 100.0 33 ............................ CTAACACCCGCAGTAATTGCATCGGTGATAGGG 27773 28 100.0 33 ............................ TTGCTAGATACAATCAAGCCATCTAGCGTGGCG 27712 28 100.0 33 ............................ TCATCGGTTGTGAGCAAGTGAGCGGCACCATGT 27651 28 100.0 33 ............................ TAGAGAGGGGAGATACAGATATGAAGATGTCAC 27590 28 100.0 33 ............................ CACATTTTGGCAATGGCTTCGCCAATTGCGTCG 27529 28 100.0 33 ............................ CTTGGCCTAGCGCTTTGGACAGTGGAATGGTCA 27468 28 100.0 33 ............................ TCGCATCACGCGTGTCGCCATCTTTTACTGTAA 27407 28 100.0 33 ............................ CCAGCTACGTGTGTTCGCTGCCCTTGAACAATT 27346 28 100.0 33 ............................ TGCATTCCACTCTTGGGAACGGACGGCAGCAAA 27285 28 100.0 33 ............................ TCCATTTCAATTTGGCGAACCATTTAAAAAAAG 27224 28 100.0 33 ............................ TCATCGTCACAGCAACTGACGTTATTTTCAATG 27163 28 100.0 33 ............................ TTTTGAGGTAGTTCATCGGGTTTGATGAGTCCT 27102 28 100.0 33 ............................ TGAAGTGAGGCAGCATCACACAAAGAACCTGAC 27041 28 100.0 33 ............................ CTTCTTCCGGTCAAGGGCTGGCGCACGATTGTG 26980 28 100.0 33 ............................ CAAGGGTTACTCCGCTTGGTTTGACCAACTCGG 26919 28 100.0 34 ............................ CTGGATCCGCTCTCGTATCTGTAACCAGTTTGTG 26857 28 100.0 33 ............................ CGATTTAATGAGCTCAAAAGTACCTTACTTTGT 26796 28 100.0 33 ............................ TAGAAAACTAGCCTCAAGATTAGTGATGACCGA 26735 28 100.0 33 ............................ TTTTTGCGGCTTGCTCCATAGATAGCGCCTTTT 26674 28 100.0 33 ............................ TAACCCCCGTTATGAGCATTTAAAAGATCACTG 26613 28 100.0 33 ............................ TACAACCGTAAGCTATCCGTCAATGGCTGGTCG 26552 28 100.0 33 ............................ TGTCTTGGCGTTTTGGGTTTCGCTCAATGCCGT 26491 28 100.0 33 ............................ TAAATGCTTCAATGTTGCTGGCGAATTTCAGGC 26430 28 100.0 33 ............................ CAGGACCACCGCCCCGCCCTCCGCTTAGCACCC 26369 28 100.0 33 ............................ CTATCGAGAGACGACCCGACGCAATGCGCGGCT 26308 28 100.0 33 ............................ CTATGACTAGTAGAGATCCGCATGAATGAGTTA 26247 28 100.0 33 ............................ CTTACCTCACAGGTGGTGAAGATGAAGCGTTTC 26186 28 100.0 33 ............................ CAAAAATCCCTCAATCGAGGGCTTGTTATTTGA 26125 28 100.0 33 ............................ CTCACTCAGCGACATAGTGGCCGTAACGCTGGT 26064 28 100.0 33 ............................ TAACGATACCACCGGAAGCGTGGTCGATGCAGG 26003 28 100.0 33 ............................ TAACGATACCACCGGAAGCGTGGTCGATGCAGG 25942 28 100.0 33 ............................ TGACTGGTCACGGTGATGTTCTGGGCGATACCA 25881 28 100.0 33 ............................ CTCTGTCCAGTTTCTGATCTCTTGCTCTCTTAG 25820 28 100.0 33 ............................ TCTTCTCTAGCTGCTTCGTTAAGTTGTGCGGAT 25759 28 100.0 33 ............................ CTTTCAATTCGTTCTCATCGATATTTCCATCCG 25698 28 100.0 33 ............................ CATTGAAGCCTTCATCCTTTATCTGGATATAGC 25637 28 100.0 33 ............................ TTTGTTAGTAGCAATTTGAGGAATCAGGCGAAC 25576 28 100.0 33 ............................ CGGCGCTTTTAAGCGGCGCTGCTCTTGGATTTC 25515 28 100.0 33 ............................ CACGGTATTGAGTCAAGTAAGTTGATTGCAGTG 25454 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 77 28 100.0 33 GTCTTCCCCACACAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGCTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : TTTGTGGGTGCAACGTCTGAGTACGCTTGGTTTGTCTTCCCCACGCAGGTTGGATTACAGAGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTATTACAGGGTTATTGGGTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTTAGGCACTTGGATAAACATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTTTTGGGTTGGGTGAAACAGGGCAGGCCTCATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATCGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCCAAACCAGAGGGGATTTGTGACAACAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //