Array 1 141341-140645 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHDJN010000003.1 Streptococcus salivarius strain P468303 KS35.ct_NODE_8_length_148032_cov_606.031_ID_64722, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    141340	    36	 100.0	    30	....................................	TGCCGTAGATGGCACGTTCGATGGTCAACG	
    141274	    36	  97.2	    30	.............................A......	ATGGTGGCAGTTTACTTCTACTGGTACTGC	
    141208	    36	 100.0	    30	....................................	ATTATCCTAGCCTTTTTGTGTATTTGAAAA	
    141142	    36	 100.0	    30	....................................	AGTATTTGGTGGATATGCACTTACAGGAGC	
    141076	    36	 100.0	    30	....................................	AGCTATGTTAGTAAGTCTTTACGGTAAGTT	
    141010	    36	 100.0	    30	....................................	TTTTAGTGTTTGACAGACAATGACTGGCAA	
    140944	    36	 100.0	    30	....................................	GATGGGCCACAAGGAACTGGTGTTTCTCGT	
    140878	    36	 100.0	    30	....................................	TGCACCAAGCATTGATAAACCAGAATGGTC	
    140812	    36	 100.0	    30	....................................	AAAATGGCAACGTGACTTACGGGCGTGGCA	
    140746	    36	 100.0	    30	....................................	TGAACTAATTAAGACGATTGGAGAACACAA	
    140680	    36	  80.6	     0	............CC...............T..CTCT	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.0	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   AAGAGAATTTTGGTGTTCGTCAATAGTTTGTCGTATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGAAAGATTAAAGGTATTCAACAATTTATTTTGGATAAGGATTACATTTTGATGCCTTACAATAACTAGTAATTTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTACATGAAGTTGAGTGGAAGAATCATTTTGTTAGAGAGTAGGTTATAAGCTATCTGATAGGTGAGAAGGTAAGTTGATTGGAAAAAGATTTCTAAAATTTTTTCGATATAGCGACAGCTCTATTTGTTAAAACGTTGTTATATAAGGCTTTTTAAGGTATAATAAACATAAAAATGAAATCATTTTGAAGCTGAAGTCAGGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAGAAAAATGACCTACGAG
# Right flank :  CTCTTTGTAATAATTTTTGGTTGACTTATCCTCAAACACATCCTATCATAGAGGAGTCTAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGACTTTGGTCGTAGCATTAGGGCAGATTCTTTGCCTCTTGCTATGACGAAAGCATCTGTGTTTTTATCACATATTATTAAAGGGTATGGAGATAAGCCTTTACCAGAGCCGACTGCGGTAAGCAGTATTCCTAATGAGGAAGAACTCGTTGTTTTGATTCAAACAGAGCTTGATTAAGACTAAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCTACATAGACGCCCAGGACGACTAAAATGCCTGCAAAAATTTGTAGTTGCGAGAAGGGTTCTCCTAAGACGACAACAGCAGCTAGAATTGAGATAATGGTCGAAATCCCAATAAAGGATGCTGTTCG

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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