Array 1 347652-348813 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JOZQ01000017.1 Listeria monocytogenes strain FSL R8-6637 contig000017, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    347652	    36	 100.0	    30	....................................	GAACTTCTTCACCATCCTTCATTTCTGTTT 	
    347718	    36	 100.0	    30	....................................	TCAGACTTCTATATCCACAATAAAAGCCCT 	
    347784	    36	 100.0	    30	....................................	GCGAGTCAATTCATCAAACCCAATCAGAAA 	
    347850	    36	 100.0	    30	....................................	GTGTACACGATAGTCCAAGTCGGTATTTCC 	
    347916	    36	 100.0	    31	....................................	CTCACGTTGTCAAGGTCAAATTTTAGATATG	
    347983	    36	 100.0	    30	....................................	GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 	
    348049	    36	 100.0	    30	....................................	AGAGGCAACGAGACTACAGACGCACTTAGA 	
    348115	    36	 100.0	    30	....................................	TTTGGTCGAATTCTTCCGCATCTTTAAACT 	
    348181	    36	 100.0	    30	....................................	TTAATGAAGAACTAGAAACAATTGAAAACA 	
    348247	    36	 100.0	    30	....................................	GCACGTATGATCGTCTTCTTTGATGACCTC 	
    348313	    36	 100.0	    30	....................................	TACTCGTATAAAAATCAAGAGAGACGTATT 	
    348379	    36	 100.0	    30	....................................	CTTCCGCGTTACATGTTTGACATCAAGTAA 	
    348445	    36	 100.0	    30	....................................	GTCTAAACTTGGAATATAACTTAGGTCTTG 	
    348511	    36	 100.0	    30	....................................	ACTGATGAAAGTATTTCTCCAATGACAAGT 	
    348577	    36	 100.0	    30	....................................	TTAAATACGATGGAATTAATCTATCGATGC 	
    348643	    36	 100.0	    30	....................................	TCAAAGAGTTTATACCTGTTTTGATTGAGT 	
    348709	    36	 100.0	    30	....................................	TAATATTCTTCCCCCCCATCGCTAACAGGG 	
    348775	    36	  86.1	     0	.............A.....C.....T.A.......G	|                              	A,A,C [348800,348806,348809]
==========	======	======	======	====================================	===============================	==================
        18	    36	  99.2	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                               	       

# Left flank :   GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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