Array 1 56394-56694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIY010000009.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-059 tig00000222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 56394 36 100.0 30 .................................... TTGGAAGACATACCAACGATTTGCTAAACG 56460 36 100.0 31 .................................... CTCCACTAAATCAAAACCATTATAGTGTAGT 56527 36 100.0 30 .................................... TCTATTAAGTAGATTGTGTCCTTTTGTGAC 56593 36 100.0 30 .................................... AGATACTATAAAAGACCAATTAAAAATTAT 56659 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 96.7 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAGGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATACATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGTTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGGAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAGTTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : TCCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTATTTTTATTTTTCTACCCTACTACTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 884476-881800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIY010000009.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-059 tig00000222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 884475 26 100.0 41 .......................... TTTGGTAAAAAATGGCGCACTGTCGGCCTACCTCTGTCTCG 884408 26 100.0 39 .......................... TTGTACCCATTTTAACAAAAAAGAGGTACAAAAGTCTCG 884343 26 100.0 40 .......................... AACTATAATTTAAAAAAAACAAAAAACCGCCCTCGTCTCG 884277 26 100.0 42 .......................... TTGCAACATCTGCAATAGTATCGGATTTAGTGGATTGTCTCG 884209 26 100.0 40 .......................... AGAAAAAAAACGGATAGCTGATAAAAGGGAGAACGTCTCG 884143 26 100.0 40 .......................... TGACTGACATCATCTGTAATCTTGTTTAGTGGAAGTCTCG 884077 26 100.0 39 .......................... ACTTCCTCCTTCTGCAAACGGTCCATCTGTTCCGTCTCG 884012 26 100.0 40 .......................... ATCTTCTGTCTCAATCAGATACCTAGCATGCCGAGTCTCG 883946 26 100.0 40 .......................... GCTGCGGTTTATCAAAATCAATGACAGTTGTCTGGTCTCG 883880 26 100.0 40 .......................... GATAATAATGGCATGGTTTCCTCCTAGAGACTATGTCTCG 883814 26 100.0 40 .......................... CTACAAATCCTAACACTGATAGCATTGCTGCACCGTCTCG 883748 26 100.0 41 .......................... TCCTGCTCTAATTTTGGTGTCTCTCCAACCGGTTTGTCTCG 883681 26 100.0 39 .......................... ACTTTAGGAGCAATTGCAGTCGCAATGATGATTGTCTCG 883616 26 100.0 41 .......................... ACAAAAAAATAAAGCACCAAGTTTTCCTTGGTGCTGTCTCG 883549 26 100.0 40 .......................... TGATTCTCATAGTTACGGGTCTGAATGCGTCCTGGTCTCG 883483 26 100.0 40 .......................... AAGTAAACTCTGAGCTTTCTTCATTTTACTGCTTGTCTCG 883417 26 100.0 40 .......................... TTCTGAAAACGGAGGAAATATTTGATCGTGTTCCGTCTCG 883351 26 100.0 38 .......................... AAGAGTAATAGTAATATGAGACATTTTTATCCGTCTCG 883287 26 100.0 40 .......................... AGGGTTTATCAAACTGTAAAATGTATCTATGACCGTCTCG 883221 26 100.0 40 .......................... TTGGCTCAATCTTTATCAATCCTGAAAAAGTAATGTCTCG 883155 26 100.0 39 .......................... AATCAACATTGTACCAATCAGAAAAGGCTCAGCGTCTCG 883090 26 100.0 40 .......................... TAAAACTGGATTGAGATTTTCCGAGGCACAAGGAGTCTCG 883024 26 100.0 41 .......................... TTTCCAAATAAGGGGACTAGAGAAGATATTTTAAAGTCTCG 882957 26 100.0 41 .......................... AGTATATGGCAGAGGAGAATCCCATTTTTTATAATGTCTCG 882890 26 100.0 39 .......................... TCAATTTTTTTGAAACAATTGGAATAGTCTTTCGTCTCG 882825 26 100.0 40 .......................... TACGATTATCATTTAAATACTAAAAAAACTACAGGTCTCG 882759 26 96.2 42 A......................... CATATCTCCTTGGGTTATCTGTGCCATCAAGGTTAGGTCTCG 882691 26 100.0 41 .......................... TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAGGTCTCG 882624 26 88.5 41 ...TT.G................... TTTGGCATGCCTCACATCAGACTCATGTCTAGCATGTCTCG 882557 26 88.5 41 ...TT.G................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 882490 26 88.5 39 ...TT.G................... CTCTAATTTTAATAACTCCTGAGCACCAGTTTGGTCTCG 882425 26 88.5 40 ...TT.G................... TTTATGTTTCTCAATCCAATCCGAAACAAACTGTGTCTCG 882359 26 88.5 40 ...TT.G................... ATGTCAGACCATTGAGGAGACTTAATGAGCGACCGTCTCG 882293 26 88.5 40 ...TT.G................... ATTTATCTTACACATTTATTATATCAAATGCCCTGTCTCG 882227 26 88.5 41 ...TT.G................... CAAATCAAACATTGACGAATAGCCCAACCAACATCGTCTCG 882160 26 88.5 42 ...TT.G................... ACTACCTACAAAAACCTCTCCGCCACCAGAATTTAGGTCTCG 882092 26 88.5 41 ...TT.G................... TATATATTGATGATTTACTACAATTGATATAAACCGTCTCG 882025 26 88.5 40 ...TT.G................... AAGTAGTAACTCATAGTTTTTTTGATTATCAGCCGTCTCG 881959 26 88.5 41 ...TT.G................... CAATCGTTGAAGATCATCATGCCACCGTTTTTAGTGTCTCG 881892 26 76.9 40 ..TTTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 881826 26 80.8 0 ..TTTC.T.................. | T [881802] ========== ====== ====== ====== ========================== ========================================== ================== 41 26 95.8 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : GCGATACGTGACTTTACGATGTTGCGACTCCGTTTTGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGCTAGGCTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTACTGATGGCCTAGTAAGGCATATCGTATCAAATTCAAGTTTTTTCATGTTACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGG # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //