Array 1 104719-106028 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRFP01000005.1 Pseudomonas aeruginosa strain S1f NODE_5_length_249899_cov_9.60823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104719 29 100.0 32 ............................. CAGCCGTGCATATCGCGCTGGATGTGCAGGGC 104780 29 100.0 32 ............................. CAACGCTTGGCGCGCTGCGAGGCGCTGGCGAA 104841 29 100.0 32 ............................. ACGATCCCGACCGCCAAGATTGGCCGTCGCCG 104902 29 100.0 32 ............................. GCTTGGATTCTTCTGCGTATGCGAAGCCGCAC 104963 29 100.0 32 ............................. ACGATGGCGTCCAGCAGGGTCGGCTCGATGTT 105024 29 100.0 32 ............................. AACGCGATATCGGACAGCGAACCGCCAGCGTG 105085 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 105146 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 105207 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 105268 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 105329 29 100.0 33 ............................. ACTGGTACCGCGCGGGCAATCAGCGAACCCGCG 105391 29 100.0 32 ............................. GCTGCTCAGGCTAGCGCCGCCTCTACTCTCAT 105452 29 100.0 32 ............................. TGTTTACGAGCTTCAGCGGCCCTCCATGTAGA 105513 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 105574 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 105635 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 105696 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 105757 29 100.0 32 ............................. CTGCGTGTTCACGCCGAAACCCTTGGCTGGGT 105818 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 105879 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 105940 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 106001 28 79.3 0 A..........A..C..-.....A....T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGTCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTAGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGAAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115200-116753 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRFP01000005.1 Pseudomonas aeruginosa strain S1f NODE_5_length_249899_cov_9.60823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115200 29 100.0 32 ............................. CAGCTCATCGAGTACAGCAACGTGCTCAACAA 115261 29 100.0 32 ............................. TAGTCATAACGGTCATAGTGCTTAGACGACAC 115322 29 96.6 32 ............................A CCGACACCTACACCTCGACCAAGACCGGGGAA 115383 29 100.0 32 ............................. CGCTGCTCCTGCTCTGCCTGATCCAGGCCGCC 115444 29 96.6 32 ............................C GCAACGCCTCGTCGAGCGACGGCAGCGCGCTG 115505 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 115566 29 100.0 32 ............................. CCACTGGGTTACCCCGTATTGGTAGAGGGTTC 115627 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 115688 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 115749 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 115810 29 100.0 32 ............................. TGCCGGTGGCGGTGCCATGCCGGGTGCCGACG 115871 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 115932 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 115993 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 116054 29 100.0 32 ............................. CCATGAAGGGTTCCTTCCGCGCCGTAGAGCAG 116115 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 116176 29 100.0 32 ............................. CCCGCGCGGCAATAAGGTGAAACTGGGAGACG 116237 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 116298 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 116359 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 116420 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 116481 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 116542 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 116603 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 116664 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 116725 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //