Array 1 16860-17621 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNGB01000026.1 Lactobacillus jensenii strain UMB0034 NODE_26_length_19066_cov_41.284017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16860 36 100.0 30 .................................... CTTATTTACATTTTTGTTTACAAATACGCG 16926 36 100.0 30 .................................... CTTGTAAGTTTTGGTGTAAATGAAAGCGCT 16992 36 100.0 30 .................................... TGAAGATGGAGAGATTGCTGCAGTTCTTGT 17058 36 100.0 30 .................................... AAGCAAAAAAAGTATATCCAAAAGGAACGG 17124 36 100.0 30 .................................... AAACGTGATTGCTGAAATTACTACAACCTT 17190 36 100.0 30 .................................... GCTAGCGTGCTAGTAGTGATTACTGAGAGT 17256 36 100.0 30 .................................... TTCCAATGGTGAAACAAGAGTTATCAAATA 17322 36 100.0 30 .................................... TGTTGCAAGCGCCGACCCTTATGGTGGTAT 17388 36 100.0 30 .................................... CTTGTAAGTTTTGGTGTAAATGAAAGCGCT 17454 36 100.0 30 .................................... TGAAGATGGAGAGATTGCTGCAGTTCTTGT 17520 36 100.0 30 .................................... AAGCAAAAAAAGTATATCCAAAAGGAACGG 17586 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.8 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCACTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG # Right flank : AGTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //